CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00178
KRH27918
KRH41192
KRH59918
KRH66037
KRH75838
KRH77555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24090.1	KRH00178	AT1G01620.1	21798944
AT4G24090.1	KRH27918	AT1G01620.1	21798944
AT4G24090.1	KRH41192	AT1G01620.1	21798944
AT4G24090.1	KRH59918	AT1G01620.1	21798944
AT4G24090.1	KRH66037	AT1G01620.1	21798944
AT4G24090.1	KRH75838	AT1G01620.1	21798944
AT4G24090.1	KRH77555	AT1G01620.1	21798944
AT4G24090.1	KRH00178	AT3G61430.1	21798944
AT4G24090.1	KRH27918	AT3G61430.1	21798944
AT4G24090.1	KRH41192	AT3G61430.1	21798944
AT4G24090.1	KRH59918	AT3G61430.1	21798944
AT4G24090.1	KRH66037	AT3G61430.1	21798944
AT4G24090.1	KRH75838	AT3G61430.1	21798944
AT4G24090.1	KRH77555	AT3G61430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031912	Potato	cytosol	52.56	59.46
VIT_02s0025g02450.t01	Wine grape	plastid	57.68	53.65
Solyc08g083010.2.1	Tomato	plastid	53.24	50.16
Zm00001d010435_P001	Maize	mitochondrion	2.05	50.0
Zm00001d044473_P001	Maize	mitochondrion	2.05	50.0
AT4G24090.1	Thale cress	plastid	48.81	46.43
Bra013761.1-P	Field mustard	plastid	48.81	45.54
Os09t0529350-01	Rice	plastid	30.72	45.45
EER97075	Sorghum	golgi, mitochondrion, plastid	43.34	41.37
GSMUA_Achr9P00850_001	Banana	plastid	42.66	40.19
TraesCS5A01G316300.1	Wheat	mitochondrion, plastid	39.93	39.53
Zm00001d052497_P001	Maize	extracellular, plasma membrane, vacuole	20.82	39.35
TraesCS5B01G316800.1	Wheat	mitochondrion, plastid	39.59	39.19
Zm00001d021242_P001	Maize	plastid	40.96	38.96
TraesCS5D01G322500.1	Wheat	mitochondrion, plastid	39.25	38.85

Protein Annotations

EMBL:ACUP02006071	EMBL:BT098975	EnsemblPlants:KRH40927	EnsemblPlantsGene:GLYMA_09G286200	EntrezGene:100803482	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR36383	ProteinID:KRH40927	ProteinID:KRH40927.1
TMHMM:TMhelix	UniParc:UPI0001B17287	UniProt:C6TML9	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr9:+:50161856..50165197

Molecular Weight (calculated)

32191.8 Da

IEP (calculated)

4.714

GRAVY (calculated)

-0.020

Length

293 amino acids

Sequence
(BLAST)

001: MNTCTIIMNS MPVPSPLLIK SFKTFPSFKC CSKSSDEKGS EDVKDTLSGV VDEQVEEFLS RKENKVLLDG LEKASQRVEM AKRELALIRK QEFAVKQLKD
101: YVNQLESKVF EIGECQRDIS EAKALVEEAE RSLLVNVGGP ENGSTSMGMK SEDIDRDEER WESVKAASIS ALVGTFSGLP ICFTQVTNTT QLLLPLAINF
201: ICCALFGVTF RYTIRRNLDD VQLKTGVAAA FGVVKGLATL GGGPLPEPNI ESFLSHAQEG TIYLSENLLI FVSAAVALDY CLKTRLLSPF PID

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.