Factsheet for Zm00001d021242_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002690_P001
Zm00001d017526_P001
Zm00001d051403_P001
Zm00001d051872_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24090.1	Zm00001d002690_P001	AT1G01620.1	21798944
AT4G24090.1	Zm00001d017526_P001	AT1G01620.1	21798944
AT4G24090.1	Zm00001d051403_P001	AT1G01620.1	21798944
AT4G24090.1	Zm00001d051872_P001	AT1G01620.1	21798944
AT4G24090.1	Zm00001d002690_P001	AT3G61430.1	21798944
AT4G24090.1	Zm00001d017526_P001	AT3G61430.1	21798944
AT4G24090.1	Zm00001d051403_P001	AT3G61430.1	21798944
AT4G24090.1	Zm00001d051872_P001	AT3G61430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010435_P001	Maize	mitochondrion	3.9	100.0
Zm00001d044473_P001	Maize	mitochondrion	3.9	100.0
EER97075	Sorghum	golgi, mitochondrion, plastid	83.44	83.71
Os09t0529350-01	Rice	plastid	48.7	75.76
TraesCS5A01G316300.1	Wheat	mitochondrion, plastid	72.08	75.0
TraesCS5B01G316800.1	Wheat	mitochondrion, plastid	71.43	74.32
TraesCS5D01G322500.1	Wheat	mitochondrion, plastid	70.45	73.31
Zm00001d052497_P001	Maize	extracellular, plasma membrane, vacuole	36.04	71.61
PGSC0003DMT400031912	Potato	cytosol	42.86	50.97
GSMUA_Achr9P00850_001	Banana	plastid	47.4	46.95
Solyc08g083010.2.1	Tomato	plastid	44.48	44.05
VIT_02s0025g02450.t01	Wine grape	plastid	44.81	43.81
AT4G24090.1	Thale cress	plastid	41.56	41.56
KRH40927	Soybean	plastid	38.96	40.96
Bra013761.1-P	Field mustard	plastid	41.23	40.45

Protein Annotations

EnsemblPlants:Zm00001d021242_P001	EnsemblPlants:Zm00001d021242_T001	EnsemblPlantsGene:Zm00001d021242	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR36383	ProteinID:ONM56615.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000221CA0E
UniProt:A0A1D6I9B1	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7:-:146763235..146765187

Molecular Weight (calculated)

33484.8 Da

IEP (calculated)

5.052

GRAVY (calculated)

-0.113

Length

308 amino acids

Sequence
(BLAST)

001: MQRAALVGSP LVPVGPLAQL AVRRRCRFHG GVRVRSSTGK DGTGTGTGGG SEGGDGAGAA ASWLSSAVGE KVDELLRREE NRALLEGVED AERRVERARA
101: ALADIERQEA AARLAREEVR RLEKRRDEIA ESQRELLQAR EMIDEAQRSL SSSLDEGSFG DMSSGDVDED NERIESVKAA AVSSVVGVLA SLPISFYEVE
201: DLPQLFLRSS IVFISCALFG VTFRYAVRRD LDNIQLKTGA PAAFAFVRGL ALLESGRTFE LSTDTLISVT LDAAVSVVEN IFIFLPAAVA LDYCFKMRFL
301: SPFPRRKQ

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.