Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 6
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013761.1-P | Field mustard | plastid | 80.84 | 79.3 |
| PGSC0003DMT400031912 | Potato | cytosol | 49.03 | 58.3 |
| Solyc08g083010.2.1 | Tomato | plastid | 52.6 | 52.09 |
| KRH40927 | Soybean | plastid | 46.43 | 48.81 |
| VIT_02s0025g02450.t01 | Wine grape | plastid | 49.68 | 48.57 |
| Os09t0529350-01 | Rice | plastid | 31.17 | 48.48 |
| EER97075 | Sorghum | golgi, mitochondrion, plastid | 43.83 | 43.97 |
| TraesCS5B01G316800.1 | Wheat | mitochondrion, plastid | 42.21 | 43.92 |
| GSMUA_Achr9P00850_001 | Banana | plastid | 44.16 | 43.73 |
| TraesCS5A01G316300.1 | Wheat | mitochondrion, plastid | 41.23 | 42.91 |
| TraesCS5D01G322500.1 | Wheat | mitochondrion, plastid | 41.23 | 42.91 |
| Zm00001d052497_P001 | Maize | extracellular, plasma membrane, vacuole | 21.1 | 41.94 |
| Zm00001d010435_P001 | Maize | mitochondrion | 1.62 | 41.67 |
| Zm00001d044473_P001 | Maize | mitochondrion | 1.62 | 41.67 |
| Zm00001d021242_P001 | Maize | plastid | 41.56 | 41.56 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828509 | ProteinID:AEE84849.1 | ArrayExpress:AT4G24090 | EnsemblPlantsGene:AT4G24090 | RefSeq:AT4G24090 |
| TAIR:AT4G24090 | RefSeq:AT4G24090-TAIR-G | EnsemblPlants:AT4G24090.1 | TAIR:AT4G24090.1 | EMBL:BT015860 | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_194140.2 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR36383 | UniProt:Q5XEV6 | TMHMM:TMhelix | UniParc:UPI0000196DA0 | SEG:seg | : |
Description
At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
Coordinates
chr4:+:12512665..12514657
Molecular Weight (calculated)
33642.1 Da
IEP (calculated)
4.676
GRAVY (calculated)
-0.116
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.