CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid

Predictor Summary:

plastid 3
extracellular 2
mitochondrion 4
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89434
EES07484
EES11257
OQU85985

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24090.1	EER89434	AT1G01620.1	21798944
AT4G24090.1	EES07484	AT1G01620.1	21798944
AT4G24090.1	EES11257	AT1G01620.1	21798944
AT4G24090.1	OQU85985	AT1G01620.1	21798944
AT4G24090.1	EER89434	AT3G61430.1	21798944
AT4G24090.1	EES07484	AT3G61430.1	21798944
AT4G24090.1	EES11257	AT3G61430.1	21798944
AT4G24090.1	OQU85985	AT3G61430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010435_P001	Maize	mitochondrion	3.91	100.0
Zm00001d044473_P001	Maize	mitochondrion	3.91	100.0
Zm00001d021242_P001	Maize	plastid	83.71	83.44
TraesCS5A01G316300.1	Wheat	mitochondrion, plastid	73.94	76.69
TraesCS5B01G316800.1	Wheat	mitochondrion, plastid	73.29	76.01
Os09t0529350-01	Rice	plastid	48.86	75.76
TraesCS5D01G322500.1	Wheat	mitochondrion, plastid	71.99	74.66
Zm00001d052497_P001	Maize	extracellular, plasma membrane, vacuole	36.16	71.61
PGSC0003DMT400031912	Potato	cytosol	43.65	51.74
GSMUA_Achr9P00850_001	Banana	plastid	47.88	47.27
Solyc08g083010.2.1	Tomato	plastid	45.93	45.34
VIT_02s0025g02450.t01	Wine grape	plastid	45.93	44.76
AT4G24090.1	Thale cress	plastid	43.97	43.83
KRH40927	Soybean	plastid	41.37	43.34
Bra013761.1-P	Field mustard	plastid	42.67	41.72

Protein Annotations

EnsemblPlants:EER97075	EnsemblPlantsGene:SORBI_3002G272100	EntrezGene:8062069	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR36383	ProteinID:EER97075	ProteinID:EER97075.1	RefSeq:XP_002460554.1	SEG:seg
TMHMM:TMhelix	unigene:Sbi.2926	UniParc:UPI0001A8391E	UniProt:C5X651	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr2:+:65520012..65523347

Molecular Weight (calculated)

33546.1 Da

IEP (calculated)

5.176

GRAVY (calculated)

-0.105

Length

307 amino acids

Sequence
(BLAST)

001: MQRALLLRPL VGSPLVPAGP LAQPAVRRRC RFHGGVRVRS STGEDGSEPG GGSGGGGAAA SWLSSAVGEK VDELLRREEN RALLEGVEDA ERRVERARAA
101: LADIERQEAA ARFARDEVRR LEKRRDEIAE SQRELLQARE MIDEAQRSLS SSLEEGSFGD MSSGDVDQDS ERIESVKAAA ISSIVGVLAS LPISFYEVED
201: LPQLFLRSSI VFICCALFGV TFRYAVRRDL DNIQLKTGAP AAFAFVRGLA LLESGRTLEL STDTLISVTL DGAVSVVENI FIFLPAAVAL DYCFKMRFLS
301: PFPRRKQ

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.