Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G316800.1 | Wheat | mitochondrion, plastid | 97.97 | 97.97 |
| TraesCS5A01G316300.1 | Wheat | mitochondrion, plastid | 97.3 | 97.3 |
| Zm00001d010435_P001 | Maize | mitochondrion | 3.38 | 83.33 |
| Zm00001d044473_P001 | Maize | mitochondrion | 3.38 | 83.33 |
| Os09t0529350-01 | Rice | plastid | 48.31 | 72.22 |
| EER97075 | Sorghum | golgi, mitochondrion, plastid | 74.66 | 71.99 |
| Zm00001d021242_P001 | Maize | plastid | 73.31 | 70.45 |
| Zm00001d052497_P001 | Maize | extracellular, plasma membrane, vacuole | 30.41 | 58.06 |
| PGSC0003DMT400031912 | Potato | cytosol | 42.91 | 49.03 |
| GSMUA_Achr9P00850_001 | Banana | plastid | 48.31 | 45.98 |
| Solyc08g083010.2.1 | Tomato | plastid | 44.93 | 42.77 |
| VIT_02s0025g02450.t01 | Wine grape | plastid | 44.26 | 41.59 |
| AT4G24090.1 | Thale cress | plastid | 42.91 | 41.23 |
| Bra013761.1-P | Field mustard | plastid | 42.57 | 40.13 |
| KRH40927 | Soybean | plastid | 38.85 | 39.25 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G322500.1 | EnsemblPlantsGene:TraesCS5D01G322500 | ncoils:Coil | PANTHER:PTHR36383 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:414069122..414070953
Molecular Weight (calculated)
32209.7 Da
IEP (calculated)
5.531
GRAVY (calculated)
-0.004
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MPHAAFLRPL IPPPLVPARP LAARCRHLRG VRGSCAPGEG AGEGAPGAEW LSSAVGEKVD ELLRREENRA LLDGVEAAER RVELARAKLA DIERQEAAAR
101: LATEEVRRLE RRRDEIAESQ RELLQAREMI DEAQCTLTSS LEDRSFWNTS GGEDIDKDSE RLESAKAAAI SSIIGVLASL PISSYEVHSL PQLFFRSSVV
201: LISCALFGVT FRYAVRRDLD NIQLKTGAAA AFAVVRGLAL LESGRPFELS TDALMSLALD GAVSVVGSIF IFLSSAIALD YCFKMGFLSP FPARKQ
101: LATEEVRRLE RRRDEIAESQ RELLQAREMI DEAQCTLTSS LEDRSFWNTS GGEDIDKDSE RLESAKAAAI SSIIGVLASL PISSYEVHSL PQLFFRSSVV
201: LISCALFGVT FRYAVRRDLD NIQLKTGAAA AFAVVRGLAL LESGRPFELS TDALMSLALD GAVSVVGSIF IFLSSAIALD YCFKMGFLSP FPARKQ
001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD
Arabidopsis Description
At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.