Factsheet for TraesCS6B01G398000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

golgi 1
mitochondrion 1
extracellular 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, golgi, mitochondrion
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G065700.1
TraesCS2A01G198500.1
TraesCS2B01G077700.1
TraesCS2B01G225900.1
TraesCS2D01G063900.1
TraesCS2D01G206300.1
TraesCS5A01G316300.1
TraesCS5B01G316800.1
TraesCS5D01G322500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01620.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS5A01G316300.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5B01G316800.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5D01G322500.1	AT4G24090.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2A01G065700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2B01G077700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2D01G063900.1	AT4G35100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97766	Soybean	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	67.97	64.93
CDY66912	Canola	extracellular	85.94	53.4
PGSC0003DMT400064008	Potato	extracellular	45.31	51.79
CDX89115	Canola	plasma membrane	88.28	50.22
VIT_18s0001g06480.t01	Wine grape	cytosol, extracellular, vacuole	51.56	46.81
TraesCS2B01G425600.1	Wheat	golgi, plasma membrane	99.22	44.1
VIT_12s0034g00250.t01	Wine grape	cytosol, extracellular, plastid	40.62	43.7
TraesCS2B01G605900.1	Wheat	golgi, peroxisome, plasma membrane	98.44	43.6
TraesCS6B01G279200.1	Wheat	plastid	92.19	40.69
CDY38017	Canola	plasma membrane	89.84	40.21
AT4G23400.1	Thale cress	plasma membrane	89.84	40.07
CDX94185	Canola	plasma membrane	89.84	40.07
Solyc01g094690.2.1	Tomato	nucleus	89.06	40.0
CDX90046	Canola	cytosol, peroxisome, plasma membrane	89.06	39.86
AT1G01620.1	Thale cress	golgi, peroxisome, plasma membrane	89.06	39.86
CDY10936	Canola	plasma membrane	89.06	39.72
AT4G00430.1	Thale cress	golgi, peroxisome, plasma membrane	89.06	39.72
AT3G61430.1	Thale cress	plasma membrane	88.28	39.51
CDX74334	Canola	cytosol, peroxisome, plasma membrane	88.28	39.24
CDX91911	Canola	cytosol, peroxisome, plasma membrane	88.28	39.24
Solyc03g096290.2.1	Tomato	nucleus	87.5	39.16
CDY48920	Canola	plasma membrane	87.5	39.16
CDY51161	Canola	cytosol, peroxisome, plasma membrane	87.5	39.16
CDY37078	Canola	cytosol, peroxisome, plasma membrane	87.5	39.16
CDY27346	Canola	cytosol, peroxisome, plasma membrane	87.5	39.16
CDX71738	Canola	plasma membrane	87.5	39.16
CDX74777	Canola	cytosol, peroxisome, plasma membrane	87.5	39.16
CDX95670	Canola	cytosol, peroxisome, plasma membrane	87.5	39.16
CDX83385	Canola	cytosol, peroxisome, plasma membrane	87.5	39.16
CDY18886	Canola	cytosol, peroxisome, plasma membrane	86.72	38.81
CDY07221	Canola	cytosol, peroxisome, plasma membrane	86.72	38.81
Solyc08g081190.2.1	Tomato	plastid	86.72	38.81
TraesCS6B01G450200.1	Wheat	plastid	88.28	38.7
TraesCS6B01G450000.1	Wheat	unclear	88.28	38.7
Solyc12g056220.1.1	Tomato	plastid	86.72	38.54
TraesCS5B01G178700.1	Wheat	plasma membrane	87.5	38.36
Solyc08g008050.2.1	Tomato	peroxisome	85.94	38.33
CDY15165	Canola	plastid	89.06	35.19
TraesCS2B01G396800.1	Wheat	golgi	75.78	33.45
TraesCS6B01G259000.1	Wheat	golgi, peroxisome, plasma membrane	74.22	33.22
TraesCS2B01G225900.1	Wheat	golgi	75.0	33.1
TraesCS2B01G396700.2	Wheat	plasma membrane	75.78	32.88
TraesCS2B01G077700.1	Wheat	plasma membrane	72.66	32.75
TraesCS5B01G570800.1	Wheat	golgi, peroxisome, plasma membrane	71.88	32.62
TraesCS7B01G002000.1	Wheat	golgi, peroxisome, plasma membrane	71.88	32.39
AT2G45960.3	Thale cress	golgi, peroxisome, plasma membrane	72.66	30.9
TraesCS5B01G332500.1	Wheat	plasma membrane	69.53	30.58
TraesCS7B01G003900.1	Wheat	golgi, peroxisome, plasma membrane	67.97	29.9
TraesCS7B01G003800.1	Wheat	golgi, peroxisome, plasma membrane	67.19	29.76
TraesCS5B01G567500.1	Wheat	golgi, peroxisome, plasma membrane	67.19	29.76
TraesCS5B01G567600.1	Wheat	golgi, peroxisome, plasma membrane	67.19	29.55
TraesCS4B01G362300.1	Wheat	golgi, peroxisome, plasma membrane	67.19	29.45
TraesCS7B01G096000.1	Wheat	golgi, peroxisome, plasma membrane	69.53	29.28
TraesCS6B01G114400.1	Wheat	golgi, peroxisome, plasma membrane	67.19	29.15
TraesCS4B01G027600.1	Wheat	plasma membrane	56.25	24.74
TraesCS3B01G608500.1	Wheat	plasma membrane	35.16	17.86
TraesCS2B01G433200.1	Wheat	plasma membrane	34.38	17.74
TraesCS4B01G310900.1	Wheat	unclear	33.59	17.2
TraesCS7B01G243000.1	Wheat	plasma membrane	32.81	16.94
TraesCS6B01G275100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	32.81	16.87
TraesCS3B01G182200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	32.81	16.73
TraesCS3B01G182400.1	Wheat	plasma membrane	31.25	16.13
TraesCS2B01G391400.1	Wheat	extracellular, plasma membrane, vacuole	32.81	15.85
TraesCS2B01G433300.1	Wheat	endoplasmic reticulum	28.91	14.92
TraesCS1B01G182200.1	Wheat	golgi	29.69	14.45
TraesCS4B01G349500.1	Wheat	plasma membrane	27.34	13.73
CDY66913	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6B01G398000.1	EnsemblPlantsGene:TraesCS6B01G398000	Gene3D:1.20.1080.10	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085	InterPro:Aquaporin-like
InterPro:Aquaporin_transptr	InterPro:IPR023271	InterPro:MIP	PANTHER:PTHR19139	PANTHER:PTHR19139:SF259	PFAM:PF00230
PRINTS:PR00783	SEG:seg	SUPFAM:SSF81338	TMHMM:TMhelix	MapMan:24.3.1.2	:

Description

No Description!

Coordinates

chr6B:+:673685646..673686679

Molecular Weight (calculated)

13508.4 Da

IEP (calculated)

10.064

GRAVY (calculated)

0.511

Length

128 amino acids

Sequence
(BLAST)

001: MGNGGGANVV APGYTKGSGL GAEIIGTFVL VYTVFSATDA KRNARDSYVP ILAPLPIGFA VFLVHLATIP ITGTGINPAR SLGAAIIYNR EHAWSDHWIF
101: WVGPFIGAAL AAVYHQVVIR AIPFKTKS

Best Arabidopsis Sequence Match ( AT1G01620.1 )
(BLAST)

001: MEGKEEDVRV GANKFPERQP IGTSAQTDKD YKEPPPAPFF EPGELSSWSF YRAGIAEFIA TFLFLYITVL TVMGVKRAPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS

Arabidopsis Description

PIP1-3TMP-B [Source:UniProtKB/TrEMBL;Acc:A0A178WIA6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.