Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25810.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT2G25810.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT2G25810.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G344300.1 | Wheat | plasma membrane | 98.04 | 98.04 |
| TraesCS5A01G518300.1 | Wheat | golgi, plasma membrane, vacuole | 96.47 | 96.09 |
| HORVU4Hr1G085250.2 | Barley | plastid | 94.12 | 79.73 |
| Zm00001d037779_P001 | Maize | cytosol, plasma membrane, vacuole | 75.69 | 75.69 |
| Zm00001d015518_P001 | Maize | endoplasmic reticulum, extracellular | 30.2 | 72.64 |
| Zm00001d019676_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 29.8 | 71.7 |
| Zm00001d020747_P001 | Maize | extracellular | 29.41 | 70.09 |
| Os05t0231700-01 | Rice | golgi, mitochondrion, plasma membrane | 81.96 | 66.56 |
| EES17913 | Sorghum | cytosol, plastid | 78.43 | 63.69 |
| Zm00001d010410_P001 | Maize | plasma membrane, plastid | 76.86 | 63.02 |
| TraesCS3B01G182200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 59.22 | 60.16 |
| TraesCS3B01G182400.1 | Wheat | plasma membrane | 58.43 | 60.08 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, vacuole | 58.04 | 59.44 |
| CDY35336 | Canola | extracellular | 31.76 | 56.64 |
| PGSC0003DMT400024847 | Potato | extracellular, plasma membrane, vacuole | 54.51 | 56.28 |
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 53.73 | 55.47 |
| CDX77009 | Canola | cytosol, plasma membrane, vacuole | 53.73 | 55.02 |
| Bra034271.1-P | Field mustard | cytosol, plasma membrane, vacuole | 53.33 | 54.62 |
| AT2G25810.1 | Thale cress | cytosol, golgi, plasma membrane | 52.94 | 54.22 |
| KRH52727 | Soybean | cytosol | 52.16 | 54.06 |
| KRH62059 | Soybean | cytosol, plasma membrane, vacuole | 51.76 | 53.66 |
| GSMUA_Achr9P06260_001 | Banana | cytosol, golgi, plasma membrane | 52.94 | 52.94 |
| GSMUA_Achr1P13800_001 | Banana | cytosol | 49.02 | 49.21 |
| TraesCS6B01G275100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.71 | 45.78 |
| TraesCS4B01G310900.1 | Wheat | unclear | 44.71 | 45.6 |
| TraesCS2B01G433200.1 | Wheat | plasma membrane | 44.31 | 45.56 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 53.33 | 45.18 |
| TraesCS3B01G608500.1 | Wheat | plasma membrane | 41.96 | 42.46 |
| TraesCS7B01G243000.1 | Wheat | plasma membrane | 40.78 | 41.94 |
| TraesCS2B01G391400.1 | Wheat | extracellular, plasma membrane, vacuole | 40.78 | 39.25 |
| TraesCS1B01G182200.1 | Wheat | golgi | 38.43 | 37.26 |
| TraesCS2B01G433300.1 | Wheat | endoplasmic reticulum | 30.98 | 31.85 |
| TraesCS6B01G398000.1 | Wheat | extracellular | 13.73 | 27.34 |
| TraesCS5B01G570800.1 | Wheat | golgi, peroxisome, plasma membrane | 30.2 | 27.3 |
| TraesCS7B01G002000.1 | Wheat | golgi, peroxisome, plasma membrane | 29.8 | 26.76 |
| TraesCS2B01G396800.1 | Wheat | golgi | 30.2 | 26.55 |
| TraesCS5B01G567500.1 | Wheat | golgi, peroxisome, plasma membrane | 29.41 | 25.95 |
| TraesCS6B01G259000.1 | Wheat | golgi, peroxisome, plasma membrane | 29.02 | 25.87 |
| TraesCS2B01G225900.1 | Wheat | golgi | 29.41 | 25.86 |
| TraesCS7B01G003900.1 | Wheat | golgi, peroxisome, plasma membrane | 29.41 | 25.77 |
| TraesCS5B01G567600.1 | Wheat | golgi, peroxisome, plasma membrane | 29.41 | 25.77 |
| TraesCS2B01G396700.2 | Wheat | plasma membrane | 29.8 | 25.76 |
| TraesCS2B01G077700.1 | Wheat | plasma membrane | 28.63 | 25.7 |
| TraesCS7B01G003800.1 | Wheat | golgi, peroxisome, plasma membrane | 29.02 | 25.61 |
| TraesCS5B01G332500.1 | Wheat | plasma membrane | 28.63 | 25.09 |
| TraesCS7B01G096000.1 | Wheat | golgi, peroxisome, plasma membrane | 29.8 | 25.0 |
| TraesCS4B01G362300.1 | Wheat | golgi, peroxisome, plasma membrane | 28.63 | 25.0 |
| TraesCS6B01G114400.1 | Wheat | golgi, peroxisome, plasma membrane | 28.24 | 24.41 |
| TraesCS4B01G027600.1 | Wheat | plasma membrane | 27.06 | 23.71 |
| TraesCS6B01G450200.1 | Wheat | plastid | 26.27 | 22.95 |
| TraesCS6B01G279200.1 | Wheat | plastid | 25.88 | 22.76 |
| TraesCS6B01G450000.1 | Wheat | unclear | 25.88 | 22.6 |
| TraesCS5B01G178700.1 | Wheat | plasma membrane | 25.88 | 22.6 |
| TraesCS2B01G425600.1 | Wheat | golgi, plasma membrane | 25.1 | 22.22 |
| TraesCS2B01G605900.1 | Wheat | golgi, peroxisome, plasma membrane | 25.1 | 22.15 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF143 | SUPFAM:SSF81338 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4B01G349500 | EnsemblPlants:TraesCS4B01G349500.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:642700229..642701459
Molecular Weight (calculated)
26364.7 Da
IEP (calculated)
6.623
GRAVY (calculated)
0.814
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTKHADSFE ERDVVVDAGC VRAVLGELVL TFLFVFTGVA AAMAAGVPEL PGAAMPMATL AGVALAQALA AGVLVTAGFH VSGGHLNPAV TVALLARGHI
101: TAFRAVLYVA AQLLASSLAC ILLRYLSGGQ ATPVPVHTLG AGIGPMQGLV MEVILTFSLL FVVYATIIDP RTTVPGYGPM LTGLIVGANT IAGGNFSGAS
201: MNPARSFGPA LAMGVWTNHW VYWVGPLVGG PLAGFVYEMV FMVKKTHEPL LGWDF
101: TAFRAVLYVA AQLLASSLAC ILLRYLSGGQ ATPVPVHTLG AGIGPMQGLV MEVILTFSLL FVVYATIIDP RTTVPGYGPM LTGLIVGANT IAGGNFSGAS
201: MNPARSFGPA LAMGVWTNHW VYWVGPLVGG PLAGFVYEMV FMVKKTHEPL LGWDF
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.