Factsheet for Solyc08g066840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 3
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25810.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT2G25810.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT2G25810.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	98.38	98.38
Bra034271.1-P	Field mustard	cytosol, plasma membrane, vacuole	74.9	74.3
AT2G25810.1	Thale cress	cytosol, golgi, plasma membrane	74.9	74.3
CDX77009	Canola	cytosol, plasma membrane, vacuole	74.49	73.9
KRH52727	Soybean	cytosol	73.28	73.58
KRH62059	Soybean	cytosol, plasma membrane, vacuole	73.28	73.58
CDY35336	Canola	extracellular	40.89	70.63
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	67.21	66.67
Zm00001d019676_P001	Maize	endoplasmic reticulum, extracellular, plastid	25.51	59.43
Zm00001d015518_P001	Maize	endoplasmic reticulum, extracellular	25.51	59.43
EES02191	Sorghum	cytosol	59.92	58.73
Os01t0232000-00	Rice	cytosol, endoplasmic reticulum, plasma membrane	59.51	58.57
TraesCS3D01G163400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	58.3	58.54
VIT_04s0008g03550.t01	Wine grape	plasma membrane	70.04	57.48
TraesCS3B01G182200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.49	56.57
TraesCS3A01G434600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.85	56.12
Zm00001d037779_P001	Maize	cytosol, plasma membrane, vacuole	56.28	54.51
Zm00001d039713_P001	Maize	plasma membrane	54.25	53.82
TraesCS4B01G349500.1	Wheat	plasma membrane	55.47	53.73
TraesCS4D01G344300.1	Wheat	plasma membrane	55.47	53.73
TraesCS3B01G182400.1	Wheat	plasma membrane	53.85	53.63
TraesCS3A01G155800.1	Wheat	plasma membrane	53.85	53.63
Zm00001d020747_P001	Maize	extracellular	23.08	53.27
Solyc10g083880.1.1	Tomato	plastid	53.44	53.23
TraesCS5A01G518300.1	Wheat	golgi, plasma membrane, vacuole	55.06	53.12
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	53.44	52.8
KXG31483	Sorghum	extracellular, golgi, plasma membrane	53.44	52.17
Zm00001d039293_P001	Maize	plastid	60.32	51.92
Solyc06g074820.2.1	Tomato	plastid	52.23	51.6
Os01t0232100-01	Rice	cytosol, endoplasmic reticulum, extracellular	52.23	50.39
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	51.42	49.8
GSMUA_Achr1P13800_001	Banana	cytosol	51.01	49.61
Solyc12g044330.1.1	Tomato	plastid	49.39	49.19
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	49.8	48.62
Solyc06g066560.1.1	Tomato	mitochondrion	49.8	45.05
HORVU4Hr1G085250.2	Barley	plastid	54.66	44.85
Solyc06g072130.2.1	Tomato	extracellular	46.56	44.4
Os05t0231700-01	Rice	golgi, mitochondrion, plasma membrane	56.28	44.27
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	46.56	44.23
EES17913	Sorghum	cytosol, plastid	55.87	43.95
Zm00001d010410_P001	Maize	plasma membrane, plastid	55.06	43.73
HORVU3Hr1G031620.5	Barley	nucleus, peroxisome, plastid	53.44	41.51
Solyc03g093230.2.1	Tomato	plastid	39.68	39.04
Solyc09g007770.2.1	Tomato	nucleus	34.01	32.43
HORVU3Hr1G031680.1	Barley	vacuole	34.82	32.09
Solyc10g084120.1.1	Tomato	nucleus	34.01	29.89
Solyc02g083510.2.1	Tomato	nucleus	30.77	29.34
Solyc06g011350.2.1	Tomato	nucleus	32.79	28.93
Solyc11g069430.1.1	Tomato	plastid	33.2	28.57
Solyc10g055630.1.1	Tomato	nucleus, plastid	32.39	28.27
Solyc01g111660.2.1	Tomato	nucleus	32.39	28.27
Solyc09g007760.2.1	Tomato	extracellular	34.41	27.78
Solyc01g094690.2.1	Tomato	nucleus	31.58	27.37
Solyc03g096290.2.1	Tomato	nucleus	31.17	26.92
Solyc08g008050.2.1	Tomato	peroxisome	30.77	26.48
Solyc12g056220.1.1	Tomato	plastid	30.36	26.04
Solyc08g081190.2.1	Tomato	plastid	29.96	25.87
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	27.53	23.53

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009705	GO:GO:0015250
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0042807	GO:GO:0055085
InterPro:IPR023271	UniProt:K4CLR0	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF186	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc08g066840.2	EnsemblPlants:Solyc08g066840.2.1
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001B34C11	:	:	:

Description

Aquaporin TIP4-1 [Source:Projected from Arabidopsis thaliana (AT2G25810) UniProtKB/Swiss-Prot;Acc:O82316]

Coordinates

chr8:-:55711848..55714115

Molecular Weight (calculated)

26125.3 Da

IEP (calculated)

6.216

GRAVY (calculated)

0.813

Length

247 amino acids

Sequence
(BLAST)

001: MAKIAVGSSR EAIQPDCIQA LIVEFICTFL FVFAGVGSAM AANKLNGDPL VSLFFVAMAH ALVVAVTISA GFRISGGHLN PAVTLGLCMG GHITVFRSIL
101: YWIDQLLASV AACALLNYLT DGMITPVHTL ANGMSYGQGL IMEVILTFSL LFTVYTTLVD PKKGILEGMG PLLTGLVVGA NIMAGGPFSG ASMNPARSFG
201: PAFVSGIWTD HWVYWIGPFI GGGLAGFICE NFFIVRSHVP LPNEETF

Best Arabidopsis Sequence Match ( AT2G25810.1 )
(BLAST)

001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN

Arabidopsis Description

TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.