Factsheet for Solyc06g011350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094690.2.1
Solyc03g096290.2.1
Solyc08g008050.2.1
Solyc08g081190.2.1
Solyc12g056220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39010.1	Solyc01g094690.2.1	AT4G23400.1	21798944
AT2G39010.1	Solyc03g096290.2.1	AT4G23400.1	21798944
AT2G39010.1	Solyc08g008050.2.1	AT4G23400.1	21798944
AT2G39010.1	Solyc08g081190.2.1	AT4G23400.1	21798944
AT2G39010.1	Solyc12g056220.1.1	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062174	Potato	plasma membrane	96.43	94.41
Solyc11g069430.1.1	Tomato	plastid	91.79	89.55
Solyc09g007770.2.1	Tomato	nucleus	75.36	81.47
Solyc10g084120.1.1	Tomato	nucleus	78.57	78.29
AT2G39010.1	Thale cress	plasma membrane	78.93	76.47
Solyc01g111660.2.1	Tomato	nucleus	76.07	75.27
Solyc10g055630.1.1	Tomato	nucleus, plastid	76.07	75.27
Bra000111.1-P	Field mustard	plasma membrane	76.07	73.96
CDY07681	Canola	plasma membrane	76.07	73.96
CDY14415	Canola	cytosol, peroxisome, plasma membrane	76.07	73.96
Solyc02g083510.2.1	Tomato	nucleus	67.5	72.97
Solyc09g007760.2.1	Tomato	extracellular	79.64	72.88
Solyc08g008050.2.1	Tomato	peroxisome	69.64	67.94
Solyc03g096290.2.1	Tomato	nucleus	68.93	67.48
Solyc12g056220.1.1	Tomato	plastid	68.57	66.67
Solyc01g094690.2.1	Tomato	nucleus	67.86	66.67
Solyc08g081190.2.1	Tomato	plastid	67.86	66.43
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	60.0	58.13
Solyc12g044330.1.1	Tomato	plastid	34.29	38.71
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	32.86	36.8
Solyc10g083880.1.1	Tomato	plastid	31.79	35.89
Solyc06g066560.1.1	Tomato	mitochondrion	34.29	35.16
Solyc06g074820.2.1	Tomato	plastid	31.07	34.8
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	31.43	34.78
Solyc06g072130.2.1	Tomato	extracellular	30.36	32.82
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	28.93	32.79
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	28.21	30.38
Solyc03g093230.2.1	Tomato	plastid	25.36	28.29

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	EMBL:AB845610	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	UniProt:E7EC27
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	EMBL:HQ645981	InterPro:IPR023271	InterPro:MIP
InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF264
SUPFAM:SSF81338	EnsemblPlantsGene:Solyc06g011350.2	EnsemblPlants:Solyc06g011350.2.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001B37DEA
SEG:seg	:	:	:	:	:

Description

Aquaporin [Source:UniProtKB/TrEMBL;Acc:E7EC27]

Coordinates

chr6:+:6572048..6573930

Molecular Weight (calculated)

29949.6 Da

IEP (calculated)

8.308

GRAVY (calculated)

0.616

Length

280 amino acids

Sequence
(BLAST)

001: MTKEVTDFSA KDYTDPPPAP LVDFEELRQW SFYRAIIAEF IATLLFLYVT ILTVIGYKHQ ADVDAGGDVC GGVGILGIAW AFGGMIFILV YCTAGISGGH
101: INPAVTFGLF LARKVSLIRA VLYMVAQCLG AICGVGFVKA FQSAYYNRYG GGVNVMAGGH SKGVGLGAEI IGTFVLVYTV FSATDPKRNA RDSHVPVLAP
201: LPIGFAVFMV HLATIPVTGT GINPARSFGA AVIFNGDKAW DEHWIFWVGP FIGAFIAAFY HQFVLRAGAI KALGSFRSTA

Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)

001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.