Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 plastid: 26371478 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400020870 | Potato | plasma membrane | 97.91 | 97.91 |
Solyc06g011350.2.1 | Tomato | nucleus | 89.55 | 91.79 |
Solyc10g084120.1.1 | Tomato | nucleus | 78.4 | 80.07 |
Solyc09g007770.2.1 | Tomato | nucleus | 71.78 | 79.54 |
Solyc01g111660.2.1 | Tomato | nucleus | 74.91 | 75.97 |
Solyc10g055630.1.1 | Tomato | nucleus, plastid | 74.91 | 75.97 |
AT2G39010.1 | Thale cress | plasma membrane | 74.91 | 74.39 |
CDY14415 | Canola | cytosol, peroxisome, plasma membrane | 73.87 | 73.61 |
Bra000111.1-P | Field mustard | plasma membrane | 73.17 | 72.92 |
CDY07681 | Canola | plasma membrane | 73.17 | 72.92 |
Solyc02g083510.2.1 | Tomato | nucleus | 65.16 | 72.2 |
Solyc09g007760.2.1 | Tomato | extracellular | 76.31 | 71.57 |
Solyc12g056220.1.1 | Tomato | plastid | 68.29 | 68.06 |
Solyc08g008050.2.1 | Tomato | peroxisome | 67.6 | 67.6 |
Solyc03g096290.2.1 | Tomato | nucleus | 66.55 | 66.78 |
Solyc01g094690.2.1 | Tomato | nucleus | 66.2 | 66.67 |
Solyc08g081190.2.1 | Tomato | plastid | 66.2 | 66.43 |
Solyc05g055990.2.1 | Tomato | nucleus, plasma membrane | 60.63 | 60.21 |
Solyc12g044330.1.1 | Tomato | plastid | 33.45 | 38.71 |
Solyc10g083880.1.1 | Tomato | plastid | 32.06 | 37.1 |
Solyc06g060760.2.1 | Tomato | endoplasmic reticulum | 31.71 | 36.4 |
Solyc06g075650.2.1 | Tomato | endoplasmic reticulum | 31.36 | 35.57 |
Solyc06g074820.2.1 | Tomato | plastid | 30.66 | 35.2 |
Solyc06g066560.1.1 | Tomato | mitochondrion | 33.45 | 35.16 |
Solyc06g072130.2.1 | Tomato | extracellular | 29.97 | 33.2 |
Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 28.57 | 33.2 |
Solyc03g019820.2.1 | Tomato | cytosol, golgi, plasma membrane | 28.22 | 31.15 |
Solyc03g093230.2.1 | Tomato | plastid | 25.78 | 29.48 |
Protein Annotations
Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 |
GO:GO:0008150 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 |
GO:GO:0055085 | InterPro:IPR023271 | UniProt:K4DA99 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 |
PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF264 | SUPFAM:SSF81338 | EnsemblPlantsGene:Solyc11g069430.1 |
EnsemblPlants:Solyc11g069430.1.1 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0001B37DE8 | SEG:seg | : |
Description
No Description!
Coordinates
chr11:-:54011293..54013963
Molecular Weight (calculated)
30674.6 Da
IEP (calculated)
8.302
GRAVY (calculated)
0.606
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKEVEAVHE QAVEYSAKDY TDPPPAPLID FEELTKWSLY RAAIAEFIAT LLFLYITILT VIGYKHQADV KAGGDICGGV GLLGIAWAFG GMIFVLVYCT
101: AGISGGHINP AVTFGLFLAR KVSLIRAILY MVAQCLGAIC GVGFVKAFQS AYYNRYGGGV NVMAGGHTKG VGLAAEIIGT FVLVYVVFSA TDPKRSARDS
201: HVPVLAPLPI GFAVFMVHLA TIPITGTGIN PARSFGAAVI FNGDKAWDEH WIFWVGPFIG AFIAAVYHQY ILRAGAIKAL GSFRSNA
101: AGISGGHINP AVTFGLFLAR KVSLIRAILY MVAQCLGAIC GVGFVKAFQS AYYNRYGGGV NVMAGGHTKG VGLAAEIIGT FVLVYVVFSA TDPKRSARDS
201: HVPVLAPLPI GFAVFMVHLA TIPITGTGIN PARSFGAAVI FNGDKAWDEH WIFWVGPFIG AFIAAVYHQY ILRAGAIKAL GSFRSNA
001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV
Arabidopsis Description
PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.