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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400020870 Potato plasma membrane 97.91 97.91
Solyc06g011350.2.1 Tomato nucleus 89.55 91.79
Solyc10g084120.1.1 Tomato nucleus 78.4 80.07
Solyc09g007770.2.1 Tomato nucleus 71.78 79.54
Solyc01g111660.2.1 Tomato nucleus 74.91 75.97
Solyc10g055630.1.1 Tomato nucleus, plastid 74.91 75.97
AT2G39010.1 Thale cress plasma membrane 74.91 74.39
CDY14415 Canola cytosol, peroxisome, plasma membrane 73.87 73.61
Bra000111.1-P Field mustard plasma membrane 73.17 72.92
CDY07681 Canola plasma membrane 73.17 72.92
Solyc02g083510.2.1 Tomato nucleus 65.16 72.2
Solyc09g007760.2.1 Tomato extracellular 76.31 71.57
Solyc12g056220.1.1 Tomato plastid 68.29 68.06
Solyc08g008050.2.1 Tomato peroxisome 67.6 67.6
Solyc03g096290.2.1 Tomato nucleus 66.55 66.78
Solyc01g094690.2.1 Tomato nucleus 66.2 66.67
Solyc08g081190.2.1 Tomato plastid 66.2 66.43
Solyc05g055990.2.1 Tomato nucleus, plasma membrane 60.63 60.21
Solyc12g044330.1.1 Tomato plastid 33.45 38.71
Solyc10g083880.1.1 Tomato plastid 32.06 37.1
Solyc06g060760.2.1 Tomato endoplasmic reticulum 31.71 36.4
Solyc06g075650.2.1 Tomato endoplasmic reticulum 31.36 35.57
Solyc06g074820.2.1 Tomato plastid 30.66 35.2
Solyc06g066560.1.1 Tomato mitochondrion 33.45 35.16
Solyc06g072130.2.1 Tomato extracellular 29.97 33.2
Solyc08g066840.2.1 Tomato endoplasmic reticulum, plasma membrane 28.57 33.2
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 28.22 31.15
Solyc03g093230.2.1 Tomato plastid 25.78 29.48
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2InterPro:Aquaporin-likeInterPro:Aquaporin_transptrGO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006833
GO:GO:0008150GO:GO:0015250GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0034220
GO:GO:0055085InterPro:IPR023271UniProt:K4DA99InterPro:MIPInterPro:MIP_CSPFAM:PF00230
PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF264SUPFAM:SSF81338EnsemblPlantsGene:Solyc11g069430.1
EnsemblPlants:Solyc11g069430.1.1TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0001B37DE8SEG:seg:
Description
No Description!
Coordinates
chr11:-:54011293..54013963
Molecular Weight (calculated)
30674.6 Da
IEP (calculated)
8.302
GRAVY (calculated)
0.606
Length
287 amino acids
Sequence
(BLAST)
001: MTKEVEAVHE QAVEYSAKDY TDPPPAPLID FEELTKWSLY RAAIAEFIAT LLFLYITILT VIGYKHQADV KAGGDICGGV GLLGIAWAFG GMIFVLVYCT
101: AGISGGHINP AVTFGLFLAR KVSLIRAILY MVAQCLGAIC GVGFVKAFQS AYYNRYGGGV NVMAGGHTKG VGLAAEIIGT FVLVYVVFSA TDPKRSARDS
201: HVPVLAPLPI GFAVFMVHLA TIPITGTGIN PARSFGAAVI FNGDKAWDEH WIFWVGPFIG AFIAAVYHQY ILRAGAIKAL GSFRSNA
Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)
001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV
Arabidopsis Description
PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.