Factsheet for Solyc06g066560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
vacuole 3
golgi 2
extracellular 1
plasma membrane 1
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g019820.2.1
Solyc06g066560.1.1
Solyc06g072130.2.1
Solyc10g084120.1.1
Solyc12g044330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16240.1	Solyc03g019820.2.1	AT1G73190.1	23163742
AT3G16240.1	Solyc06g072130.2.1	AT1G73190.1	23163742
AT3G16240.1	Solyc06g066560.1.1	AT3G16240.1	23163742
AT3G16240.1	Solyc12g044330.1.1	AT3G16240.1	23163742
AT3G16240.1	Solyc10g084120.1.1	AT3G53420.1	23163742
AT3G16240.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT3G16240.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	86.81	95.18
Solyc12g044330.1.1	Tomato	plastid	81.32	89.52
Bra021171.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	64.1	83.33
KRH47241	Soybean	mitochondrion	75.46	83.06
KRH44312	Soybean	extracellular	75.46	83.06
Bra001626.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	75.46	82.73
CDX82410	Canola	plasma membrane	75.46	82.73
CDY63821	Canola	endoplasmic reticulum, plasma membrane, vacuole	74.73	81.93
CDY20190	Canola	endoplasmic reticulum, plasma membrane, vacuole	74.73	81.93
CDY30146	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.99	81.45
CDX97733	Canola	endoplasmic reticulum, extracellular	73.99	81.45
Bra027181.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	73.99	81.45
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	72.53	80.82
GSMUA_Achr9P28940_001	Banana	plasma membrane	72.53	80.82
AT3G16240.1	Thale cress	plasma membrane	73.63	80.4
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	70.33	79.01
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	71.06	77.6
Os06t0336200-01	Rice	nucleus	69.96	77.02
CDX75873	Canola	extracellular, golgi, vacuole	77.29	76.73
EER89797	Sorghum	plasma membrane	68.5	75.4
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	68.13	74.7
HORVU7Hr1G081770.8	Barley	plasma membrane	68.13	74.7
TraesCS7B01G243000.1	Wheat	plasma membrane	67.77	74.6
CDY47816	Canola	endoplasmic reticulum, plasma membrane, vacuole	68.5	73.91
TraesCS7A01G331300.1	Wheat	unclear	67.03	73.79
TraesCS7D01G339600.1	Wheat	plasma membrane	66.67	65.23
Solyc10g083880.1.1	Tomato	plastid	56.78	62.5
Solyc06g074820.2.1	Tomato	plastid	53.85	58.8
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	51.65	55.73
Solyc06g072130.2.1	Tomato	extracellular	48.72	51.35
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	45.05	49.8
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	46.52	48.85
Solyc03g093230.2.1	Tomato	plastid	43.96	47.81
Solyc09g007770.2.1	Tomato	nucleus	34.43	36.29
Solyc10g084120.1.1	Tomato	nucleus	36.26	35.23
Solyc02g083510.2.1	Tomato	nucleus	33.33	35.14
Solyc06g011350.2.1	Tomato	nucleus	35.16	34.29
Solyc11g069430.1.1	Tomato	plastid	35.16	33.45
Solyc10g055630.1.1	Tomato	nucleus, plastid	34.07	32.86
Solyc01g111660.2.1	Tomato	nucleus	34.07	32.86
Solyc09g007760.2.1	Tomato	extracellular	35.9	32.03
Solyc01g094690.2.1	Tomato	nucleus	33.33	31.93
Solyc03g096290.2.1	Tomato	nucleus	32.6	31.12
Solyc12g056220.1.1	Tomato	plastid	31.87	30.21
Solyc08g081190.2.1	Tomato	plastid	31.5	30.07
Solyc08g008050.2.1	Tomato	peroxisome	31.5	29.97
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	30.77	29.07

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009705	GO:GO:0015250
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0042807	GO:GO:0055085
InterPro:IPR023271	UniProt:K4C7T1	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF257	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc06g066560.1	EnsemblPlants:Solyc06g066560.1.1
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0002765DAA	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:41810276..41813775

Molecular Weight (calculated)

27950.0 Da

IEP (calculated)

7.496

GRAVY (calculated)

0.759

Length

273 amino acids

Sequence
(BLAST)

001: MGSSPFKQLT QPRNKHIANY SFSQNALYSL GRFDDSLNCG SIKAYLAEFI STLLFVFAGV GSAIAYNKLT ADAALDPAGL VAVAVCHGFA LFVAVSIGAN
101: ISGGHVNPAV TFGLALGGQI TLLTGLFYWV AQLLGAIVAC CLLKFVTGGL TVPIHGVAAG VGATEGVVME IIITFALVYT VYATAADPKK GSLGTIAPIA
201: IGFIVGANIL AAGPFSGGSM NPARSFGPAV VSGNFAGNWI YWVGPLIGGG LAGLIYSNVF MNYGDHVPLS SDF

Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)

001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF

Arabidopsis Description

TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.