Factsheet for GSMUA_Achr6P05830_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 3
endoplasmic reticulum 2
extracellular 2
golgi 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P10640_001
GSMUA_Achr4P10230_001
GSMUA_Achr4P26010_001
GSMUA_Achr6P05830_001
GSMUA_Achr9P28940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16240.1	GSMUA_Achr2P10640_001	AT1G73190.1	23163742
AT3G16240.1	GSMUA_Achr4P26010_001	AT1G73190.1	23163742
AT3G16240.1	GSMUA_Achr10P...	AT3G16240.1	23163742
AT3G16240.1	GSMUA_Achr6P05830_001	AT3G16240.1	23163742
AT3G16240.1	GSMUA_Achr9P28940_001	AT3G16240.1	23163742
AT3G16240.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28940_001	Banana	plasma membrane	93.06	93.06
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	86.53	87.24
KRG93712	Soybean	plasma membrane, vacuole	80.0	82.7
KRH09912	Soybean	endoplasmic reticulum, plasma membrane, vacuole	82.86	82.19
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	82.86	81.53
KRH23420	Soybean	plasma membrane, vacuole	82.04	81.38
Os06t0336200-01	Rice	nucleus	81.22	80.24
EER89797	Sorghum	plasma membrane	80.82	79.84
CDX82410	Canola	plasma membrane	80.82	79.52
CDY63821	Canola	endoplasmic reticulum, plasma membrane, vacuole	80.82	79.52
KRH44312	Soybean	extracellular	80.41	79.44
KRH47241	Soybean	mitochondrion	80.41	79.44
Solyc12g044330.1.1	Tomato	plastid	80.41	79.44
Bra001626.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	80.41	79.12
CDY20190	Canola	endoplasmic reticulum, plasma membrane, vacuole	80.41	79.12
TraesCS7A01G331300.1	Wheat	unclear	79.18	78.23
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	79.18	78.23
CDX97733	Canola	endoplasmic reticulum, extracellular	79.18	78.23
Bra027181.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	79.18	78.23
HORVU7Hr1G081770.8	Barley	plasma membrane	79.18	77.91
TraesCS7B01G243000.1	Wheat	plasma membrane	78.78	77.82
CDY30146	Canola	endoplasmic reticulum, extracellular, plasma membrane	78.78	77.82
AT3G16240.1	Thale cress	plasma membrane	78.78	77.2
Bra021171.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	66.12	77.14
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	77.14	75.9
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	76.73	75.5
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	74.69	73.49
Solyc06g066560.1.1	Tomato	mitochondrion	80.82	72.53
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	73.47	72.29
CDX75873	Canola	extracellular, golgi, vacuole	80.82	72.0
CDY47816	Canola	endoplasmic reticulum, plasma membrane, vacuole	72.65	70.36
TraesCS7D01G339600.1	Wheat	plasma membrane	77.96	68.46
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	67.76	66.4
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	64.9	63.6
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	64.08	62.8
GSMUA_Achr10P...	Banana	plasma membrane	61.22	59.52
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	59.59	57.94
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	59.18	57.77
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	53.88	53.01
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	53.47	51.57
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	52.65	50.79
GSMUA_Achr4P24600_001	Banana	golgi, plasma membrane, plastid	49.8	46.39
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	43.67	41.96
GSMUA_Achr1P13800_001	Banana	cytosol	42.04	40.55
GSMUA_Achr4P20780_001	Banana	extracellular	31.43	39.29
GSMUA_Achr11P...	Banana	extracellular	31.02	38.78
GSMUA_AchrUn_...	Banana	extracellular	30.61	38.46
GSMUA_Achr2P03980_001	Banana	extracellular	29.39	37.89
GSMUA_Achr1P00370_001	Banana	extracellular	28.98	37.37
GSMUA_Achr8P11540_001	Banana	extracellular	28.98	37.37
GSMUA_Achr8P18910_001	Banana	extracellular	29.8	37.24
GSMUA_AchrUn_...	Banana	extracellular	28.57	36.84
GSMUA_Achr5P12400_001	Banana	extracellular	28.16	36.32
GSMUA_Achr8P33980_001	Banana	extracellular	29.39	36.18
GSMUA_AchrUn_...	Banana	extracellular	27.76	35.79
GSMUA_AchrUn_...	Banana	extracellular	27.76	35.79
GSMUA_Achr8P33990_001	Banana	extracellular	28.57	35.35
GSMUA_Achr5P11480_001	Banana	plasma membrane	28.57	35.35
GSMUA_Achr1P26390_001	Banana	endoplasmic reticulum, extracellular, plasma membrane, plastid	28.57	35.35
GSMUA_Achr1P07460_001	Banana	extracellular	24.9	34.86
GSMUA_Achr11P...	Banana	extracellular	29.39	33.64
GSMUA_Achr10P...	Banana	plasma membrane	28.98	33.18
GSMUA_Achr1P02360_001	Banana	unclear	35.1	30.5
GSMUA_Achr2P11190_001	Banana	plasma membrane	34.69	30.25
GSMUA_Achr1P26380_001	Banana	plasma membrane	33.47	29.18

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr6G05830_001	EnsemblPlants:GSMUA_Achr6P05830_001	EnsemblPlants:GSMUA_Achr6T05830_001	InterPro:IPR023271	UniProt:M0T4I1
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF257	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0002947FA9	SEG:seg

Description

Probable aquaporin TIP2-2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G05830_001]

Coordinates

chr6:+:3923145..3924353

Molecular Weight (calculated)

24827.3 Da

IEP (calculated)

5.955

GRAVY (calculated)

0.885

Length

245 amino acids

Sequence
(BLAST)

001: MAGIAFGRFD DSFSVGSLKA YLAEFISTLL FVFAGVGSAI AYNKLTSSAA LDPAGLVAIA VCHGFALFVA VSVGFNISGG HVNPAVTFGL ALGGQITILT
101: GILYWISQLL GAVVGAFLLK FSTGLDTPTH GLGAGVGAGE GVVMEIIITF ALVYTVYATA ADPKKGSLGT IAPIAIGFIV GANILAAGPF SGGSMNPARS
201: FGPAVASGDF SDLWIYFVGP LIGGGLAGLV YTYAYLLHDH QPLPQ

Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)

001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF

Arabidopsis Description

TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.