Factsheet for GSMUA_Achr10P06770_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
golgi 3
plasma membrane 3
vacuole 3
extracellular 3
endoplasmic reticulum 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plasma membrane: 23745761

gfp PMID: 23745761 doi

S Sreedharan, UK Shekhawat, TR Ganapathi

Plant Cell Culture Technology Section, Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	85.51	96.32
GSMUA_Achr11P...	Banana	extracellular	95.79	95.79
GSMUA_AchrUn_...	Banana	extracellular	85.05	95.79
GSMUA_Achr1P00370_001	Banana	extracellular	84.58	95.26
GSMUA_Achr5P12400_001	Banana	extracellular	83.64	94.21
GSMUA_Achr2P03980_001	Banana	extracellular	83.64	94.21
GSMUA_AchrUn_...	Banana	extracellular	82.71	93.16
GSMUA_Achr8P11540_001	Banana	extracellular	82.24	92.63
GSMUA_Achr11P...	Banana	extracellular	69.16	75.51
GSMUA_Achr4P20780_001	Banana	extracellular	69.16	75.51
GSMUA_AchrUn_...	Banana	extracellular	68.22	74.87
GSMUA_Achr8P18910_001	Banana	extracellular	68.22	74.49
GSMUA_Achr5P11480_001	Banana	plasma membrane	68.69	74.24
GSMUA_Achr8P33980_001	Banana	extracellular	67.29	72.36
GSMUA_Achr8P33990_001	Banana	extracellular	66.36	71.72
GSMUA_Achr1P26390_001	Banana	endoplasmic reticulum, extracellular, plasma membrane, plastid	64.95	70.2
GSMUA_Achr1P07460_001	Banana	extracellular	50.93	62.29
GSMUA_Achr2P11190_001	Banana	plasma membrane	75.23	57.3
GSMUA_Achr1P02360_001	Banana	unclear	75.23	57.09
GSMUA_Achr1P26380_001	Banana	plasma membrane	68.22	51.96
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	36.92	31.1
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	36.45	30.71
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	35.05	30.0
GSMUA_Achr9P28940_001	Banana	plasma membrane	34.11	29.8
GSMUA_Achr10P...	Banana	plasma membrane	35.05	29.76
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	35.05	29.76
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	33.64	29.63
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	33.18	28.98
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	33.18	28.51
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	33.18	28.51
GSMUA_Achr4P24600_001	Banana	golgi, plasma membrane, plastid	34.58	28.14
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	32.71	28.11
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	32.24	27.6
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	32.24	27.6
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	32.24	27.49
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	29.91	25.1
GSMUA_Achr1P13800_001	Banana	cytosol	27.1	22.83

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr10G06770_001	EnsemblPlants:GSMUA_Achr10P06770_001	EnsemblPlants:GSMUA_Achr10T06770_001	InterPro:IPR023271	UniProt:M0RG04
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF190	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000295E14E	SEG:seg

Description

Probable aquaporin PIP1-2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G06770_001]

Coordinates

chr10:-:17047443..17048918

Molecular Weight (calculated)

22433.6 Da

IEP (calculated)

9.972

GRAVY (calculated)

0.614

Length

214 amino acids

Sequence
(BLAST)

001: MGVVKSSTKC STVGIQGIAW AFGGMIFALV YCTAGISGGH INPAVTFGLF LARKLSLTRA LFYMVMQCLG AICGAGVVKG FQKGLYENNG GGANVVAPGY
101: TKGDGLGAEI VGTFILVYTV FSATDAKRSA RDSHVPILAP LPIGFAVFLV HLATIPITGT GINPARSLGA AIIYNKGHAW DDHWIFWVGP FIGAALAALY
201: HQVVIRAIPF KSRS

Best Arabidopsis Sequence Match ( AT4G23400.1 )
(BLAST)

001: MEGKEEDVNV GANKFPERQP IGTAAQTESK DYKEPPPAPF FEPGELKSWS FYRAGIAEFI ATFLFLYVTV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRALFYIVMQ CLGAICGAGV VKGFQPGLYQ TNGGGANVVA HGYTKGSGLG AEIVGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HAWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKT

Arabidopsis Description

PIP1-5PIP1D [Source:UniProtKB/TrEMBL;Acc:A0A178V129]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.