Factsheet for GSMUA_Achr1P02360_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P02360_001
GSMUA_Achr1P07460_001
GSMUA_Achr1P20280_001
GSMUA_Achr1P26380_001
GSMUA_Achr2P11190_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P11480_001
GSMUA_Achr5P12400_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P11540_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16850.1	GSMUA_Achr5P12400_001	AT1G01620.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT1G01620.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT2G16850.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr5P12400_001	AT4G00430.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT4G00430.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT2G16850.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT2G16850.1	GSMUA_Achr5P12400_001	AT4G23400.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT4G23400.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT1G01620.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT1G01620.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT4G35100.1	GSMUA_Achr1P02360_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr1P07460_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr1P26380_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr2P11190_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr5P11480_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT3G61430.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT3G61430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT3G61430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT3G61430.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT4G00430.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT4G00430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT4G23400.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT4G23400.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P11480_001	Banana	plasma membrane	67.02	95.45
GSMUA_Achr2P11190_001	Banana	plasma membrane	95.04	95.37
GSMUA_Achr8P33990_001	Banana	extracellular	61.7	87.88
KRH60692	Soybean	mitochondrion	84.04	86.18
VIT_03s0038g02520.t01	Wine grape	plasma membrane	84.04	84.95
AT2G16850.1	Thale cress	plasma membrane	83.69	84.89
GSMUA_Achr4P20780_001	Banana	extracellular	58.87	84.69
KRH51390	Soybean	plasma membrane	83.33	84.53
GSMUA_Achr8P33980_001	Banana	extracellular	59.57	84.42
GSMUA_Achr11P...	Banana	extracellular	58.51	84.18
TraesCS2D01G063900.1	Wheat	plasma membrane	84.75	84.15
TraesCS2B01G077700.1	Wheat	plasma membrane	84.75	84.15
TraesCS2A01G065700.1	Wheat	golgi	84.75	84.15
AT4G35100.1	Thale cress	plasma membrane	83.33	83.93
CDX69112	Canola	plasma membrane	83.33	83.63
Bra017697.1-P	Field mustard	cytosol	83.33	83.63
Bra011585.1-P	Field mustard	plasma membrane	82.98	83.27
CDY52648	Canola	plasma membrane	82.98	83.27
CDX76314	Canola	cytosol	82.98	83.27
CDY17511	Canola	plasma membrane	82.62	82.92
GSMUA_Achr1P26390_001	Banana	endoplasmic reticulum, extracellular, plasma membrane, plastid	58.16	82.83
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	82.27	82.56
GSMUA_Achr8P18910_001	Banana	extracellular	57.09	82.14
GSMUA_AchrUn_...	Banana	extracellular	56.74	82.05
CDX72515	Canola	golgi, plasma membrane	73.76	81.89
Solyc01g111660.2.1	Tomato	nucleus	81.91	81.63
PGSC0003DMT400015824	Potato	plasma membrane	81.56	81.27
KRH16406	Soybean	extracellular	43.62	80.39
Solyc10g055630.1.1	Tomato	nucleus, plastid	80.5	80.21
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	70.92	79.68
GSMUA_Achr1P00370_001	Banana	extracellular	53.55	79.47
PGSC0003DMT400068708	Potato	plasma membrane	79.43	79.15
GSMUA_Achr5P12400_001	Banana	extracellular	52.84	78.42
GSMUA_AchrUn_...	Banana	extracellular	52.84	78.42
GSMUA_AchrUn_...	Banana	extracellular	52.84	78.42
Solyc02g083510.2.1	Tomato	nucleus	71.99	78.38
GSMUA_Achr8P11540_001	Banana	extracellular	52.48	77.89
GSMUA_Achr1P07460_001	Banana	extracellular	48.23	77.71
GSMUA_Achr2P03980_001	Banana	extracellular	52.13	77.37
GSMUA_AchrUn_...	Banana	extracellular	51.77	76.84
GSMUA_Achr11P...	Banana	extracellular	58.16	76.64
GSMUA_Achr10P...	Banana	plasma membrane	57.09	75.23
GSMUA_Achr1P26380_001	Banana	plasma membrane	73.05	73.31
HORVU2Hr1G010990.2	Barley	plasma membrane	75.53	66.98
GSMUA_Achr9P28940_001	Banana	plasma membrane	31.91	36.73
GSMUA_Achr10P...	Banana	plasma membrane	32.27	36.11
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	31.91	36.0
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	32.27	35.83
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	30.85	35.8
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	31.91	35.43
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	31.21	35.34
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	30.5	35.1
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	30.85	34.94
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	30.14	34.0
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	30.14	33.73
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	29.79	33.6
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	29.08	32.93
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	29.08	32.67
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	27.66	30.59
GSMUA_Achr4P24600_001	Banana	golgi, plasma membrane, plastid	28.01	30.04
GSMUA_Achr1P13800_001	Banana	cytosol	24.47	27.17

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr1G02360_001	EnsemblPlants:GSMUA_Achr1P02360_001	EnsemblPlants:GSMUA_Achr1T02360_001	InterPro:IPR023271	UniProt:M0RWE4
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF196	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0002964EFB	SEG:seg

Description

Probable aquaporin PIP2-6 [Source:GMGC_GENE;Acc:GSMUA_Achr1G02360_001]

Coordinates

chr1:-:1907059..1908631

Molecular Weight (calculated)

29897.5 Da

IEP (calculated)

8.742

GRAVY (calculated)

0.542

Length

282 amino acids

Sequence
(BLAST)

001: MSKEVSVEVE QPPAKDYSDP PPAPLLDFGE VRLWSFYRAL IAEFVATLLF LYVSIATVIG HKEQNAADQC SGVGLLGIAW AFGGMIFILV YCTAGISGGH
101: INPAVTFGLF LARKVSLIRA VLYIVAQCLG GIVGVGIVKG IMKHQYNSLG GGANVVATGY SKGTALGAEI IGTFVLVYTV FSATDPKRSA RDSHVPVLAP
201: LPIGFAVFMV HLATIPITGT GINPARSLGA AVIYNQDKAW DDHWIFWVGP FIGALAAAAY HQYILRAAAI KALGSFRSNP SN

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.