Factsheet for Solyc01g111660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094690.2.1
Solyc03g096290.2.1
Solyc05g015640.2.1
Solyc06g011350.2.1
Solyc08g008050.2.1
Solyc08g081190.2.1
Solyc11g069430.1.1
Solyc12g056220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35100.1	Solyc01g094690.2.1	AT1G01620.1	21798944
AT4G35100.1	Solyc03g096290.2.1	AT1G01620.1	21798944
AT4G35100.1	Solyc08g008050.2.1	AT1G01620.1	21798944
AT4G35100.1	Solyc08g081190.2.1	AT1G01620.1	21798944
AT4G35100.1	Solyc12g056220.1.1	AT1G01620.1	21798944
AT4G35100.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT4G35100.1	Solyc06g011350.2.1	AT2G39010.1	21798944
AT4G35100.1	Solyc11g069430.1.1	AT2G39010.1	21798944
AT4G35100.1	Solyc01g094690.2.1	AT3G61430.1	21798944
AT4G35100.1	Solyc03g096290.2.1	AT3G61430.1	21798944
AT4G35100.1	Solyc08g008050.2.1	AT3G61430.1	21798944
AT4G35100.1	Solyc08g081190.2.1	AT3G61430.1	21798944
AT4G35100.1	Solyc12g056220.1.1	AT3G61430.1	21798944
AT4G35100.1	Solyc01g094690.2.1	AT4G00430.1	21798944
AT4G35100.1	Solyc03g096290.2.1	AT4G00430.1	21798944
AT4G35100.1	Solyc08g008050.2.1	AT4G00430.1	21798944
AT4G35100.1	Solyc08g081190.2.1	AT4G00430.1	21798944
AT4G35100.1	Solyc12g056220.1.1	AT4G00430.1	21798944
AT4G35100.1	Solyc01g094690.2.1	AT4G23400.1	21798944
AT4G35100.1	Solyc03g096290.2.1	AT4G23400.1	21798944
AT4G35100.1	Solyc08g008050.2.1	AT4G23400.1	21798944
AT4G35100.1	Solyc08g081190.2.1	AT4G23400.1	21798944
AT4G35100.1	Solyc12g056220.1.1	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015824	Potato	plasma membrane	98.23	98.23
Bra017697.1-P	Field mustard	cytosol	88.69	89.32
CDX69112	Canola	plasma membrane	88.69	89.32
AT4G35100.1	Thale cress	plasma membrane	88.34	89.29
Bra011585.1-P	Field mustard	plasma membrane	88.34	88.97
CDY52648	Canola	plasma membrane	88.34	88.97
Solyc10g055630.1.1	Tomato	nucleus, plastid	88.69	88.69
CDX76314	Canola	cytosol	87.63	88.26
CDY17511	Canola	plasma membrane	87.63	88.26
KRH60692	Soybean	mitochondrion	85.51	88.0
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	87.28	87.9
VIT_03s0038g02520.t01	Wine grape	plasma membrane	86.22	87.46
CDX72515	Canola	golgi, plasma membrane	77.03	85.83
KRH51390	Soybean	plasma membrane	83.75	85.25
GSMUA_Achr5P11480_001	Banana	plasma membrane	59.36	84.85
GSMUA_Achr2P11190_001	Banana	plasma membrane	83.75	84.34
GSMUA_Achr1P02360_001	Banana	unclear	81.63	81.91
KRH16406	Soybean	extracellular	44.17	81.7
Os04t0233400-01	Rice	plasma membrane	80.92	81.21
TraesCS2A01G065700.1	Wheat	golgi	78.8	78.52
TraesCS2B01G077700.1	Wheat	plasma membrane	78.45	78.17
TraesCS2D01G063900.1	Wheat	plasma membrane	78.45	78.17
Solyc10g084120.1.1	Tomato	nucleus	75.97	76.51
Solyc02g083510.2.1	Tomato	nucleus	69.96	76.45
Solyc09g007770.2.1	Tomato	nucleus	69.96	76.45
Solyc06g011350.2.1	Tomato	nucleus	75.27	76.07
Solyc11g069430.1.1	Tomato	plastid	75.97	74.91
GSMUA_Achr1P07460_001	Banana	extracellular	44.52	72.0
GSMUA_Achr1P26380_001	Banana	plasma membrane	69.96	70.46
Solyc09g007760.2.1	Tomato	extracellular	74.56	68.95
Solyc03g096290.2.1	Tomato	nucleus	67.84	67.13
Solyc08g008050.2.1	Tomato	peroxisome	67.84	66.9
Solyc12g056220.1.1	Tomato	plastid	67.84	66.67
Solyc08g081190.2.1	Tomato	plastid	66.43	65.73
Solyc01g094690.2.1	Tomato	nucleus	66.08	65.61
HORVU2Hr1G010990.2	Barley	plasma membrane	68.9	61.32
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	57.6	56.4
Solyc12g044330.1.1	Tomato	plastid	34.63	39.52
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	32.51	36.8
Solyc10g083880.1.1	Tomato	plastid	31.8	36.29
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	31.8	35.57
Solyc06g074820.2.1	Tomato	plastid	30.74	34.8
Solyc06g066560.1.1	Tomato	mitochondrion	32.86	34.07
Solyc06g072130.2.1	Tomato	extracellular	30.74	33.59
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	28.27	32.39
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	27.92	30.38
Solyc03g093230.2.1	Tomato	plastid	25.44	28.69

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	EMBL:AB845613	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009506	GO:GO:0009719
GO:GO:0009737	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0046658	GO:GO:0055085	InterPro:IPR023271	UniProt:K4B428	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF196	SUPFAM:SSF81338
EnsemblPlantsGene:Solyc01g111660.2	EnsemblPlants:Solyc01g111660.2.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001B37F79	:

Description

Plasmamembrane intrinsic protein 28 [Source:UniProtKB/TrEMBL;Acc:K4B428]

Coordinates

chr1:+:97866417..97867882

Molecular Weight (calculated)

30127.8 Da

IEP (calculated)

8.587

GRAVY (calculated)

0.556

Length

283 amino acids

Sequence
(BLAST)

001: MSKEVIEEGQ VQQHGKDYVD PPPAPLLDFA ELKLWSFYRA LIAEFIATLL FLYVTVATVI GHKKLNGADK CDGVGILGIA WAFGGMIFVL VYCTAGISGG
101: HINPAVTFGL FLARKVSLVR AVGYIIAQCL GAICGVGFVK AFMTHPYNAL GGGANFVQSG YNNGTALGAE IIGTFVLVYT VFSATDPKRS ARDSHIPVLA
201: PLPIGFAVFM VHLATIPITG TGINPARSFG AAVIADNKNV WDDQWIFWVG PFVGALLAAA YHQYILRAAA IKALGSFRSN ATN

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.