Factsheet for Solyc09g007770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053882	Potato	extracellular	66.8	88.27
PGSC0003DMT400053877	Potato	plasma membrane	94.59	87.81
Solyc09g007760.2.1	Tomato	extracellular	98.07	83.01
Solyc10g084120.1.1	Tomato	nucleus	89.58	82.56
KRH70184	Soybean	plasma membrane	87.26	79.3
KRG91899	Soybean	plasma membrane	86.87	79.23
KRH70183	Soybean	mitochondrion	86.87	78.95
PGSC0003DMT400053881	Potato	plasma membrane	93.44	78.83
KRH08522	Soybean	plasma membrane	86.49	78.6
KRH08523	Soybean	plasma membrane	86.49	78.6
Solyc06g011350.2.1	Tomato	nucleus	81.47	75.36
KRH34875	Soybean	plasma membrane	86.1	75.34
EER98451	Sorghum	plasma membrane	83.4	74.48
Zm00001d019563_P006	Maize	plasma membrane	83.01	74.14
TraesCS2A01G198500.1	Wheat	plasma membrane	82.63	73.79
TraesCS2D01G206300.1	Wheat	golgi	82.24	73.45
TraesCS2B01G225900.1	Wheat	golgi	82.24	73.45
Os07t0448800-01	Rice	plasma membrane	82.24	73.45
Solyc02g083510.2.1	Tomato	nucleus	72.97	72.97
Solyc10g055630.1.1	Tomato	nucleus, plastid	78.76	72.08
Zm00001d005421_P001	Maize	plasma membrane	81.08	71.92
Solyc11g069430.1.1	Tomato	plastid	79.54	71.78
Solyc01g111660.2.1	Tomato	nucleus	76.45	69.96
Solyc03g096290.2.1	Tomato	nucleus	73.36	66.43
Solyc01g094690.2.1	Tomato	nucleus	71.81	65.26
Solyc08g081190.2.1	Tomato	plastid	71.81	65.03
Solyc12g056220.1.1	Tomato	plastid	71.81	64.58
Solyc08g008050.2.1	Tomato	peroxisome	71.43	64.46
HORVU2Hr1G038740.1	Barley	golgi, mitochondrion, plasma membrane	82.24	62.46
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	63.32	56.75
Solyc12g044330.1.1	Tomato	plastid	36.29	37.9
Solyc06g074820.2.1	Tomato	plastid	35.91	37.2
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	35.91	37.2
Solyc10g083880.1.1	Tomato	plastid	35.52	37.1
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	35.14	35.97
Solyc06g066560.1.1	Tomato	mitochondrion	36.29	34.43
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	32.43	34.01
Solyc06g072130.2.1	Tomato	extracellular	33.59	33.59
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	31.27	31.15
Solyc03g093230.2.1	Tomato	plastid	29.34	30.28

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833
GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	InterPro:IPR023271	UniProt:K4CQG6	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF158	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc09g007770.2
EnsemblPlants:Solyc09g007770.2.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000276BAF6	:	:

Description

No Description!

Coordinates

chr9:+:1300967..1302708

Molecular Weight (calculated)

27831.1 Da

IEP (calculated)

8.550

GRAVY (calculated)

0.578

Length

259 amino acids

Sequence
(BLAST)

001: MHQKIYQDPP PAPLIDPEEL GKWSFYRAII AEFIATLLFL YITVLTVIGY KSQSSTDQCG GVGILGIAWA FGGMIFVLVY CTAGISGGHI NPAVTFGLFL
101: ARKVSLVRAI MYIVAQCLGA ICGCGLVKAF QKAYYVKYGG GANTLNDGYS TGTGLGAEII GTFVLVYTVF AATDPKRNAR DSHVPVLAPL PIGFAVFMVH
201: LATIPVTGTG INPARSFGAA VVYGHNKAWD DQWIFWVGPF IGAAIAAFYH QFILRGWSC

Best Arabidopsis Sequence Match ( AT3G53420.2 )
(BLAST)

001: MAKDVEAVPG EGFQTRDYQD PPPAPFIDGA ELKKWSFYRA VIAEFVATLL FLYITVLTVI GYKIQSDTDA GGVDCGGVGI LGIAWAFGGM IFILVYCTAG
101: ISGGHINPAV TFGLFLARKV SLPRALLYII AQCLGAICGV GFVKAFQSSY YTRYGGGANS LADGYSTGTG LAAEIIGTFV LVYTVFSATD PKRSARDSHV
201: PVLAPLPIGF AVFMVHLATI PITGTGINPA RSFGAAVIYN KSKPWDDHWI FWVGPFIGAA IAAFYHQFVL RASGSKSLGS FRSAANV

Arabidopsis Description

PIP2-1PIP2A [Source:UniProtKB/TrEMBL;Acc:A0A178V8P4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.