Factsheet for Solyc12g044330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 3
cytosol 1
extracellular 2
endoplasmic reticulum 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g019820.2.1
Solyc06g066560.1.1
Solyc06g072130.2.1
Solyc10g084120.1.1
Solyc12g044330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16240.1	Solyc03g019820.2.1	AT1G73190.1	23163742
AT3G16240.1	Solyc06g072130.2.1	AT1G73190.1	23163742
AT3G16240.1	Solyc06g066560.1.1	AT3G16240.1	23163742
AT3G16240.1	Solyc12g044330.1.1	AT3G16240.1	23163742
AT3G16240.1	Solyc10g084120.1.1	AT3G53420.1	23163742
AT3G16240.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT3G16240.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	97.58	97.58
Bra001626.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	84.27	83.94
CDX82410	Canola	plasma membrane	84.27	83.94
KRH47241	Soybean	mitochondrion	83.47	83.47
KRH44312	Soybean	extracellular	83.47	83.47
CDY20190	Canola	endoplasmic reticulum, plasma membrane, vacuole	82.66	82.33
CDY63821	Canola	endoplasmic reticulum, plasma membrane, vacuole	82.66	82.33
Bra021171.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.35	81.9
Bra027181.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	81.45	81.45
CDX97733	Canola	endoplasmic reticulum, extracellular	81.45	81.45
CDY30146	Canola	endoplasmic reticulum, extracellular, plasma membrane	81.45	81.45
Solyc06g066560.1.1	Tomato	mitochondrion	89.52	81.32
AT3G16240.1	Thale cress	plasma membrane	81.85	81.2
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	79.44	80.41
Os06t0336200-01	Rice	nucleus	80.24	80.24
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	77.82	79.42
GSMUA_Achr9P28940_001	Banana	plasma membrane	78.23	79.18
EER89797	Sorghum	plasma membrane	79.03	79.03
TraesCS7B01G243000.1	Wheat	plasma membrane	78.63	78.63
HORVU7Hr1G081770.8	Barley	plasma membrane	78.23	77.91
TraesCS7A01G331300.1	Wheat	unclear	77.82	77.82
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	77.42	76.8
CDX75873	Canola	extracellular, golgi, vacuole	84.68	76.36
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	75.4	75.1
CDY47816	Canola	endoplasmic reticulum, plasma membrane, vacuole	75.0	73.52
TraesCS7D01G339600.1	Wheat	plasma membrane	77.42	68.82
Solyc10g083880.1.1	Tomato	plastid	62.1	62.1
Solyc06g074820.2.1	Tomato	plastid	58.47	58.0
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	56.05	54.94
Solyc06g072130.2.1	Tomato	extracellular	52.82	50.58
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	49.19	49.39
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	50.81	48.46
Solyc03g093230.2.1	Tomato	plastid	47.18	46.61
Solyc09g007770.2.1	Tomato	nucleus	37.9	36.29
Solyc02g083510.2.1	Tomato	nucleus	37.1	35.52
Solyc10g084120.1.1	Tomato	nucleus	39.92	35.23
Solyc01g111660.2.1	Tomato	nucleus	39.52	34.63
Solyc06g011350.2.1	Tomato	nucleus	38.71	34.29
Solyc10g055630.1.1	Tomato	nucleus, plastid	39.11	34.28
Solyc11g069430.1.1	Tomato	plastid	38.71	33.45
Solyc01g094690.2.1	Tomato	nucleus	36.69	31.93
Solyc09g007760.2.1	Tomato	extracellular	39.11	31.7
Solyc03g096290.2.1	Tomato	nucleus	36.29	31.47
Solyc12g056220.1.1	Tomato	plastid	35.08	30.21
Solyc08g081190.2.1	Tomato	plastid	34.68	30.07
Solyc08g008050.2.1	Tomato	peroxisome	34.68	29.97
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	34.27	29.41

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009705	GO:GO:0015250
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0042807	GO:GO:0055085
InterPro:IPR023271	UniProt:K4DFC1	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF257	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc12g044330.1	EnsemblPlants:Solyc12g044330.1.1
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001B34C0B	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:38616020..38617254

Molecular Weight (calculated)

25076.8 Da

IEP (calculated)

6.331

GRAVY (calculated)

1.002

Length

248 amino acids

Sequence
(BLAST)

001: MPCIAFGRFD DSFSLGSIKA YIAEFISTLL FVFAGVGSAI AYNKVTADAA LDPSGLVAVA VCHGFALFVA VAIAANISGG HVNPAVTFGL ALGGQITLLT
101: GLFYWIAQLL GAIVGCYLLK VVTGGMAVPI HGVAAGVGAA EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGN FAGIWIYWVG PLVGGGLAGL IYSNVFMNHE HAPLSSDF

Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)

001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF

Arabidopsis Description

TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.