Factsheet for Os06t0336200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 4
plasma membrane 4
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 19621931
plastid: 21433289
nucleus: 26035336

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0527900-01
Os06t0336200-01
Os07t0448800-01
Os10t0492600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16240.1	Os04t0527900-01	AT1G73190.1	23163742
AT3G16240.1	Os10t0492600-01	AT1G73190.1	23163742
AT3G16240.1	Os06t0336200-01	AT3G16240.1	23163742
AT3G16240.1	Os07t0448800-01	AT3G53420.1	23163742

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89797	Sorghum	plasma membrane	96.37	96.37
HORVU7Hr1G081770.8	Barley	plasma membrane	90.32	89.96
TraesCS7B01G243000.1	Wheat	plasma membrane	89.92	89.92
TraesCS7A01G331300.1	Wheat	unclear	88.31	88.31
GSMUA_Achr9P28940_001	Banana	plasma membrane	80.24	81.22
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	80.24	81.22
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	79.44	81.07
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	80.65	80.32
Solyc12g044330.1.1	Tomato	plastid	80.24	80.24
TraesCS7D01G339600.1	Wheat	plasma membrane	88.71	78.85
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	78.63	78.63
KRH44312	Soybean	extracellular	78.23	78.23
KRH47241	Soybean	mitochondrion	78.23	78.23
KRH09912	Soybean	endoplasmic reticulum, plasma membrane, vacuole	77.82	78.14
KRH23420	Soybean	plasma membrane, vacuole	77.42	77.73
KRG93712	Soybean	plasma membrane, vacuole	74.19	77.64
CDY63821	Canola	endoplasmic reticulum, plasma membrane, vacuole	77.82	77.51
CDY20190	Canola	endoplasmic reticulum, plasma membrane, vacuole	77.82	77.51
CDX82410	Canola	plasma membrane	77.42	77.11
Bra001626.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	77.02	76.71
Bra021171.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	64.52	76.19
CDY30146	Canola	endoplasmic reticulum, extracellular, plasma membrane	75.81	75.81
CDX97733	Canola	endoplasmic reticulum, extracellular	75.0	75.0
Bra027181.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	75.0	75.0
AT3G16240.1	Thale cress	plasma membrane	75.4	74.8
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	73.39	73.09
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	72.98	72.69
Solyc06g066560.1.1	Tomato	mitochondrion	77.02	69.96
Os02t0658100-01	Rice	vacuole	58.06	69.9
CDX75873	Canola	extracellular, golgi, vacuole	77.02	69.45
CDY47816	Canola	endoplasmic reticulum, plasma membrane, vacuole	66.94	65.61
Os04t0550900-00	Rice	endoplasmic reticulum, extracellular, vacuole	36.69	64.08
Os03t0146100-01	Rice	nucleus	61.69	61.2
Os01t0232000-00	Rice	cytosol, endoplasmic reticulum, plasma membrane	47.58	47.01
Os10t0492600-01	Rice	plastid	47.98	45.08
Os04t0527900-01	Rice	plastid	42.34	39.62
Os01t0232100-01	Rice	cytosol, endoplasmic reticulum, extracellular	39.52	38.28
Os04t0550800-01	Rice	endoplasmic reticulum, plasma membrane	40.73	37.55
Os05t0231700-01	Rice	golgi, mitochondrion, plasma membrane	43.95	34.71
Os07t0448800-01	Rice	plasma membrane	38.71	33.1
Os02t0629200-02	Rice	plasma membrane	37.9	32.64
Os07t0448400-01	Rice	plasma membrane	17.34	31.85
Os04t0521100-01	Rice	plasma membrane	37.1	31.72
Os04t0233400-01	Rice	plasma membrane	35.89	31.56
Os07t0448100-01	Rice	plasma membrane	35.89	31.12
Os03t0861300-01	Rice	cytosol, peroxisome, plasma membrane	35.08	31.07
Os09t0541000-01	Rice	cytosol, plasma membrane, vacuole	34.27	29.31
Os02t0666200-01	Rice	plasma membrane	33.47	28.72
Os04t0559700-01	Rice	plasma membrane	33.06	28.47
Os07t0448200-00	Rice	mitochondrion, nucleus, plastid	31.05	27.8
Os10t0481100-01	Rice	plasma membrane	8.06	21.51

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	EntrezGene:4340941	EMBL:AK073531	EMBL:AK099015	EMBL:AK099141
EMBL:AK099616	EMBL:AK104270	EMBL:AK104377	EMBL:AK104464	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
ProteinID:BAD61899.1	ProteinID:BAD61902.1	ProteinID:BAF19470.2	ProteinID:BAS97594.1	ProteinID:EAZ36877.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150
GO:GO:0009705	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0042807	GO:GO:0055085	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	EnsemblPlantsGene:Os06g0336200
EnsemblPlants:Os06t0336200-01	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF266
UniProt:Q5Z6F0	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00004506BF	RefSeq:XP_015643913.1
SEG:seg	:	:	:	:	:

Description

TONOPLAST INTRINSIC PROTEIN 2;2Delta-tonoplast intrinsic protein. (Os06t0336200-01);Similar to cDNA clone:001-035-G09, full insert sequence. (Os06t0336200-02)

Coordinates

chr6:+:13407319..13408715

Molecular Weight (calculated)

25015.5 Da

IEP (calculated)

6.064

GRAVY (calculated)

0.910

Length

248 amino acids

Sequence
(BLAST)

001: MSGNIAFGRF DDSFSAASLK AYVAEFISTL VFVFAGVGSA IAYTKLTGGA PLDPAGLVAV AVCHGFGLFV AVAIGANISG GHVNPAVTFG LALGGQITIL
101: TGVFYWIAQL LGAIVGAVLV QFCTGVATPT HGLSGVGAFE GVVMEIIVTF GLVYTVYATA ADPKKGSLGT IAPIAIGFIV GANILVAGPF SGGSMNPARS
201: FGPAVASGDY TNIWIYWVGP LVGGGLAGLV YRYVYMCGDH APVASSEF

Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)

001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF

Arabidopsis Description

TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.