CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68239
CDX72962
CDX75873
CDX78177
CDX78905
CDX82410
CDX96453
CDX98596
CDX99411
CDY01565
CDY11123
CDY13298
CDY48045
CDY56697
CDY66321

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16240.1	CDX68239	AT1G73190.1	23163742
AT3G16240.1	CDX72962	AT1G73190.1	23163742
AT3G16240.1	CDX96453	AT1G73190.1	23163742
AT3G16240.1	CDY11123	AT1G73190.1	23163742
AT3G16240.1	CDY48045	AT1G73190.1	23163742
AT3G16240.1	CDY66321	AT1G73190.1	23163742
AT3G16240.1	CDX75873	AT3G16240.1	23163742
AT3G16240.1	CDX82410	AT3G16240.1	23163742
AT3G16240.1	CDX78177	AT3G53420.1	23163742
AT3G16240.1	CDY13298	AT3G53420.1	23163742
AT3G16240.1	CDY56697	AT3G53420.1	23163742
AT3G16240.1	CDX78905	AT4G19030.1	21798944
AT3G16240.1	CDX98596	AT4G19030.1	21798944
AT3G16240.1	CDX99411	AT4G19030.1	21798944
AT3G16240.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001626.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	98.8	98.8
CDY63821	Canola	endoplasmic reticulum, plasma membrane, vacuole	96.79	96.79
CDY20190	Canola	endoplasmic reticulum, plasma membrane, vacuole	96.39	96.39
AT3G16240.1	Thale cress	plasma membrane	96.39	96.0
CDX97733	Canola	endoplasmic reticulum, extracellular	94.78	95.16
CDY30146	Canola	endoplasmic reticulum, extracellular, plasma membrane	94.78	95.16
CDX75873	Canola	extracellular, golgi, vacuole	99.6	90.18
Solyc12g044330.1.1	Tomato	plastid	83.94	84.27
KRH09912	Soybean	endoplasmic reticulum, plasma membrane, vacuole	81.93	82.59
KRG93712	Soybean	plasma membrane, vacuole	77.51	81.43
CDY47816	Canola	endoplasmic reticulum, plasma membrane, vacuole	82.73	81.42
KRH23420	Soybean	plasma membrane, vacuole	80.72	81.38
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	79.52	80.82
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	78.71	80.66
GSMUA_Achr9P28940_001	Banana	plasma membrane	78.71	80.0
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	78.31	78.31
Os06t0336200-01	Rice	nucleus	77.11	77.42
CDY65121	Canola	endoplasmic reticulum, plasma membrane, vacuole	76.71	76.4
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	76.31	76.31
CDY64499	Canola	endoplasmic reticulum, plasma membrane, vacuole	76.31	76.0
EER89797	Sorghum	plasma membrane	75.5	75.81
Solyc06g066560.1.1	Tomato	mitochondrion	82.73	75.46
TraesCS7B01G243000.1	Wheat	plasma membrane	74.7	75.0
CDY51678	Canola	plasma membrane, vacuole	75.1	74.8
HORVU7Hr1G081770.8	Barley	plasma membrane	74.7	74.7
TraesCS7A01G331300.1	Wheat	unclear	73.9	74.19
CDX77768	Canola	endoplasmic reticulum, plasma membrane, vacuole	74.7	74.1
CDY59296	Canola	endoplasmic reticulum, plasma membrane, vacuole	74.3	73.71
CDY28932	Canola	endoplasmic reticulum, extracellular, vacuole	61.45	72.86
TraesCS7D01G339600.1	Wheat	plasma membrane	74.3	66.31
CDY66645	Canola	plastid	56.22	63.35
CDY67380	Canola	plastid	56.22	63.35
CDY48983	Canola	plasma membrane	64.26	63.24
CDY28539	Canola	plasma membrane	64.26	63.24
CDY13639	Canola	plasma membrane	63.45	62.45
CDX83623	Canola	golgi, plasma membrane, plastid	63.45	62.45
CDY53270	Canola	plasma membrane	62.25	61.75
CDY07142	Canola	cytosol	58.23	57.54
CDY69446	Canola	cytosol	58.23	57.54
CDX77009	Canola	cytosol, plasma membrane, vacuole	53.41	53.41
CDY35336	Canola	extracellular	30.52	53.15
CDY66321	Canola	plasma membrane	54.62	51.13
CDY11123	Canola	cytosol	53.82	50.57
CDX96453	Canola	cytosol	53.82	50.57
CDX68239	Canola	cytosol	53.82	50.57
CDY48045	Canola	golgi, mitochondrion, plasma membrane	53.82	50.38
CDX72962	Canola	plasma membrane	53.41	50.19
CDY21731	Canola	golgi, mitochondrion, plasma membrane	52.61	49.06
CDX81850	Canola	golgi, mitochondrion, plasma membrane	52.21	48.69
CDY19176	Canola	plasma membrane	51.0	47.57
CDY26214	Canola	plasma membrane	51.0	47.57
CDY47413	Canola	mitochondrion, plastid	42.17	40.7
CDX99048	Canola	mitochondrion, plastid	41.77	40.31
CDY66912	Canola	extracellular	29.32	35.44
CDY70391	Canola	extracellular, golgi	22.49	35.22
CDX72515	Canola	golgi, plasma membrane	35.74	35.04
CDX89115	Canola	plasma membrane	30.92	34.22
CDX69112	Canola	plasma membrane	38.15	33.81
CDY52648	Canola	plasma membrane	38.15	33.81
CDX76314	Canola	cytosol	38.15	33.81
CDY09192	Canola	plasma membrane	34.94	33.59
CDY17511	Canola	plasma membrane	37.75	33.45
CDX91341	Canola	plasma membrane	38.15	33.33
CDY46758	Canola	plasma membrane	37.75	33.22
CDX78177	Canola	plasma membrane	38.15	33.1
CDY56697	Canola	plasma membrane	38.15	33.1
CDX71032	Canola	plasma membrane	34.54	33.08
CDY31523	Canola	plasma membrane	34.54	33.08
CDY46759	Canola	plasma membrane	37.75	32.98
CDX91340	Canola	plasma membrane	37.75	32.98
CDX67611	Canola	plasma membrane	37.75	32.87
CDY07519	Canola	plasma membrane	37.75	32.87
CDX88767	Canola	plasma membrane	34.14	32.69
CDY07681	Canola	plasma membrane	37.75	32.64
CDY14415	Canola	cytosol, peroxisome, plasma membrane	37.75	32.64
CDY13298	Canola	plasma membrane	37.35	32.4
CDX78265	Canola	plasma membrane	36.95	32.17
CDX73446	Canola	peroxisome	36.95	32.17
CDY53629	Canola	cytosol	33.33	32.05
CDY51161	Canola	cytosol, peroxisome, plasma membrane	36.55	31.82
CDY07221	Canola	cytosol, peroxisome, plasma membrane	36.55	31.82
CDX74334	Canola	cytosol, peroxisome, plasma membrane	36.55	31.6
CDX91911	Canola	cytosol, peroxisome, plasma membrane	36.55	31.6
CDX74983	Canola	cytosol, peroxisome, plasma membrane	24.9	31.47
CDX83385	Canola	cytosol, peroxisome, plasma membrane	36.14	31.47
CDY18886	Canola	cytosol, peroxisome, plasma membrane	36.14	31.47
CDY37078	Canola	cytosol, peroxisome, plasma membrane	36.14	31.47
CDX74777	Canola	cytosol, peroxisome, plasma membrane	36.14	31.47
CDY27346	Canola	cytosol, peroxisome, plasma membrane	36.14	31.47
CDY48920	Canola	plasma membrane	35.74	31.12
CDX71738	Canola	plasma membrane	35.74	31.12
CDX95670	Canola	cytosol, peroxisome, plasma membrane	35.74	31.12
CDX94185	Canola	plasma membrane	35.74	31.01
CDY10936	Canola	plasma membrane	35.74	31.01
CDY38017	Canola	plasma membrane	35.34	30.77
CDX90046	Canola	cytosol, peroxisome, plasma membrane	35.34	30.77
CDX74984	Canola	cytosol, peroxisome, plasma membrane	37.75	30.32
CDY15165	Canola	plastid	35.74	27.47
CDY66913	Canola	cytosol, mitochondrion, nucleus	2.01	10.87

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	GO:A0A078CZY7	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlants:CDX82410
ProteinID:CDX82410	ProteinID:CDX82410.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00137537001	InterPro:IPR023271
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF257	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001B34E53	SEG:seg

Description

BnaA03g34110D

Coordinates

chrLK031828:-:1089426..1090964

Molecular Weight (calculated)

24945.4 Da

IEP (calculated)

5.430

GRAVY (calculated)

0.991

Length

249 amino acids

Sequence
(BLAST)

001: MAGIAFGSFD DSFSLASLKA YLAEFISTLL FVFAGVGSAI AYGKLTSDAA LDTSGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL ALGGQITLIT
101: GVFYWIAQLL GSTAACFLLK FVTGGLAVPT HSVAAGLGAI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMSSS EHVPLASDF

Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)

001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF

Arabidopsis Description

TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.