Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012567.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 99.66 | 99.66 |
| CDY01565 | Canola | cytosol, peroxisome, plasma membrane | 98.99 | 98.99 |
| CDX78905 | Canola | cytosol, peroxisome, plasma membrane | 93.29 | 93.6 |
| CDX99411 | Canola | cytosol, peroxisome, plasma membrane | 91.61 | 91.92 |
| AT4G18910.1 | Thale cress | golgi, peroxisome, vacuole | 89.26 | 90.48 |
| AT4G19030.1 | Thale cress | plasma membrane | 80.2 | 80.74 |
| KRH42926 | Soybean | plasma membrane | 65.77 | 71.53 |
| KRH11076 | Soybean | cytosol | 65.44 | 71.43 |
| VIT_10s0003g01830.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 67.45 | 71.28 |
| KRH21197 | Soybean | cytosol, peroxisome, plasma membrane | 65.1 | 71.06 |
| KRH59036 | Soybean | plasma membrane | 64.09 | 70.74 |
| KRH59035 | Soybean | plasma membrane | 63.42 | 69.74 |
| PGSC0003DMT400071510 | Potato | plasma membrane | 63.76 | 68.59 |
| Solyc03g005980.2.1 | Tomato | plasma membrane | 63.42 | 68.23 |
| KRH42923 | Soybean | extracellular | 60.4 | 66.42 |
| Solyc02g071920.2.1 | Tomato | plasma membrane | 64.09 | 65.86 |
| PGSC0003DMT400073246 | Potato | plasma membrane | 64.09 | 65.86 |
| CDY71538 | Canola | extracellular, plasma membrane, vacuole | 45.3 | 59.21 |
| KRH45251 | Soybean | extracellular | 17.79 | 58.24 |
| CDX99689 | Canola | extracellular | 32.21 | 56.8 |
| CDX84320 | Canola | extracellular, plasma membrane, plastid, vacuole | 52.01 | 54.2 |
| CDY17241 | Canola | cytosol, plasma membrane, plastid, vacuole | 52.01 | 54.2 |
| CDY17243 | Canola | extracellular, plasma membrane, plastid, vacuole | 52.01 | 54.2 |
| CDX84321 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 51.68 | 53.85 |
| CDX99688 | Canola | plasma membrane | 50.67 | 53.36 |
| CDY65403 | Canola | plasma membrane | 50.34 | 53.0 |
| CDY01700 | Canola | plasma membrane | 48.66 | 51.24 |
| CDX74558 | Canola | plasma membrane | 48.66 | 51.24 |
| CDY72002 | Canola | plastid | 14.43 | 50.59 |
| CDY35532 | Canola | endoplasmic reticulum, extracellular, vacuole | 44.63 | 47.33 |
| CDY41749 | Canola | plasma membrane | 46.98 | 47.3 |
| CDY16269 | Canola | plastid | 11.07 | 45.83 |
| CDY51581 | Canola | plastid | 11.07 | 45.83 |
| CDX84114 | Canola | plasma membrane | 48.32 | 43.11 |
| CDY69767 | Canola | plasma membrane | 35.57 | 39.7 |
| CDX87340 | Canola | cytosol, peroxisome, plasma membrane | 40.6 | 39.67 |
| CDY39946 | Canola | cytosol, peroxisome, plasma membrane | 40.6 | 39.67 |
| CDY66949 | Canola | cytosol, peroxisome, plasma membrane | 40.27 | 39.34 |
| CDY53224 | Canola | cytosol, peroxisome, plasma membrane | 40.27 | 39.34 |
| CDY35531 | Canola | vacuole | 40.94 | 38.98 |
| CDY29921 | Canola | vacuole | 40.94 | 38.73 |
| CDX67591 | Canola | plasma membrane | 38.59 | 38.21 |
| CDY25253 | Canola | plasma membrane | 38.26 | 37.87 |
| CDX94261 | Canola | plasma membrane | 38.26 | 37.87 |
| CDY05100 | Canola | plasma membrane | 37.92 | 37.54 |
| CDX90757 | Canola | plasma membrane | 37.92 | 37.54 |
| CDY29922 | Canola | peroxisome, plasma membrane, vacuole | 40.94 | 37.2 |
| CDY35528 | Canola | cytosol | 16.44 | 36.3 |
| HORVU7Hr1G088900.1 | Barley | cytosol, golgi, plasma membrane | 24.16 | 34.12 |
| CDY27709 | Canola | plasma membrane | 28.86 | 31.62 |
| CDY05231 | Canola | plasma membrane | 28.86 | 31.62 |
| GSMUA_Achr4P10230_001 | Banana | plastid | 19.46 | 18.47 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | GO:A0A078EBQ9 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | EnsemblPlants:CDX98596 |
| ProteinID:CDX98596 | ProteinID:CDX98596.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00106625001 | InterPro:IPR023271 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF189 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0004EEFFFF | SEG:seg |
Description
BnaA03g43810D
Coordinates
chrLK031906:+:22417..24620
Molecular Weight (calculated)
31667.6 Da
IEP (calculated)
8.589
GRAVY (calculated)
0.422
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEISGNGHG DSKEGAVMVN INQEAELQQQ QKEAIHTTKS MKKQDSVLSF SVPFLQKLMA EILGTYFLIF AGCASVAVNA QHDKAVTLPG IAIVWGLTVM
101: VLVYSLGHIS GAHFNPAVTI AFASCGRFPL KQVPAYVISQ VIGSTLAAAT LRLLFGLDQD VCSGKHDVFV GTLPSGSDLQ SFVIEFIITF YLMFIISGVA
201: TDNRAIGELA GLAVGSTVLL NVIIAGPVSG ASMNPGRSLG PAMVYNCYKG IWIYIASPIL GAVAGAWVYN TVRYTDKPLR EITKSGSFLK SVRNGSSR
101: VLVYSLGHIS GAHFNPAVTI AFASCGRFPL KQVPAYVISQ VIGSTLAAAT LRLLFGLDQD VCSGKHDVFV GTLPSGSDLQ SFVIEFIITF YLMFIISGVA
201: TDNRAIGELA GLAVGSTVLL NVIIAGPVSG ASMNPGRSLG PAMVYNCYKG IWIYIASPIL GAVAGAWVYN TVRYTDKPLR EITKSGSFLK SVRNGSSR
001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
Arabidopsis Description
NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.