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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane, vacuole, plastid

Predictor Summary:
  • nucleus 1
  • plastid 1
  • mitochondrion 1
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid, vacuole
Any Predictor:cytosol, nucleus, plasma membrane, plastid, vacuole
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005430.1-P Field mustard cytosol, plasma membrane, plastid, vacuole 97.9 97.56
CDX84320 Canola extracellular, plasma membrane, plastid, vacuole 95.8 95.8
CDX84321 Canola endoplasmic reticulum, plasma membrane, plastid, vacuole 95.8 95.8
CDY17243 Canola extracellular, plasma membrane, plastid, vacuole 95.45 95.45
AT2G34390.1 Thale cress plasma membrane 86.36 85.76
AT2G29870.1 Thale cress plastid 39.86 82.01
CDY01565 Canola cytosol, peroxisome, plasma membrane 54.2 52.01
CDX98596 Canola cytosol, peroxisome, plasma membrane 54.2 52.01
CDX78905 Canola cytosol, peroxisome, plasma membrane 53.85 51.85
CDX99411 Canola cytosol, peroxisome, plasma membrane 52.45 50.51
CDY72002 Canola plastid 13.29 44.71
CDY51581 Canola plastid 11.19 44.44
CDY71538 Canola extracellular, plasma membrane, vacuole 34.97 43.86
CDY35532 Canola endoplasmic reticulum, extracellular, vacuole 42.66 43.42
CDY16269 Canola plastid 10.84 43.06
CDY41749 Canola plasma membrane 44.06 42.57
PGSC0003DMT400073240 Potato cytosol, plasma membrane, vacuole 26.92 42.54
Solyc06g073590.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane 50.7 42.03
CDX99688 Canola plasma membrane 40.91 41.34
PGSC0003DMT400015246 Potato endoplasmic reticulum, peroxisome, plasma membrane 50.0 41.21
CDY01700 Canola plasma membrane 40.56 40.99
CDX74558 Canola plasma membrane 40.56 40.99
CDY65403 Canola plasma membrane 40.56 40.99
TraesCS7A01G355000.1 Wheat peroxisome 39.86 40.86
TraesCS7B01G272700.1 Wheat plasma membrane 39.86 40.86
TraesCS7D01G367800.1 Wheat golgi, peroxisome, plasma membrane 39.86 40.86
CDX84114 Canola plasma membrane 46.5 39.82
Os06t0552700-01 Rice cytosol, peroxisome, plastid 36.71 38.46
CDY29921 Canola vacuole 42.31 38.41
CDY35531 Canola vacuole 41.96 38.34
CDY29922 Canola peroxisome, plasma membrane, vacuole 43.71 38.11
CDX99689 Canola extracellular 22.38 37.87
KXG20157 Sorghum golgi, nucleus, plasma membrane 37.76 37.11
Solyc02g071910.1.1 Tomato endoplasmic reticulum, extracellular 29.37 36.36
CDY39946 Canola cytosol, peroxisome, plasma membrane 37.76 35.41
CDX87340 Canola cytosol, peroxisome, plasma membrane 37.76 35.41
CDX67591 Canola plasma membrane 37.06 35.22
CDY53224 Canola cytosol, peroxisome, plasma membrane 37.41 35.08
CDY66949 Canola cytosol, peroxisome, plasma membrane 37.41 35.08
CDY25253 Canola plasma membrane 36.71 34.88
CDX94261 Canola plasma membrane 36.71 34.88
CDY05100 Canola plasma membrane 36.36 34.55
CDX90757 Canola plasma membrane 36.36 34.55
Zm00001d046303_P001 Maize golgi, peroxisome, plasma membrane 36.71 33.12
CDY27709 Canola plasma membrane 29.37 30.88
CDY05231 Canola plasma membrane 29.37 30.88
CDY69767 Canola plasma membrane 28.67 30.71
CDY35528 Canola cytosol 13.64 28.89
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.1GO:A0A078FWC6UniProt:A0A078FWC6InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY17241ProteinID:CDY17241ProteinID:CDY17241.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00095318001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF155SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelix
UniParc:UPI0004EEB087SEG:seg::::
Description
BnaA05g09470DBnaA05g09470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWC6]
Coordinates
chrLK032071:-:617995..619105
Molecular Weight (calculated)
30355.5 Da
IEP (calculated)
8.950
GRAVY (calculated)
0.575
Length
286 amino acids
Sequence
(BLAST)
001: MDDISVSKSN HGNVVVLNIQ APPVSKTSLP SSPPTSPPLL SVHFMQKLIA ELVGTYYLIF AGCAAIAVNA QHNNVVTLVG IAVVWGLVVM VLVYSLGHIS
101: AHFNPAVTIA LASCKRFPLY QLPAYLIVQV IGSTLASATL RLLFDLNNDV CSKKHDVFLG SSPSGTDLQA FGMEFIITGF LMIVICAITT SKRTTKELEG
201: LIIGATVTLN VIFAGEVSGA SMNPARSIGP ALVWGCYKGI WIYLLAPTLG AVSAALIHKL LPATQKTNPE FSKTGSSHKR VTDLPL
Best Arabidopsis Sequence Match ( AT2G34390.1 )
(BLAST)
001: MDDISVSKSN HGNVVVLNIK ASSLADTSLP SNKHESSSPP LLSVHFLQKL LAELVGTYYL IFAGCAAIAV NAQHNHVVTL VGIAVVWGIV IMVLVYCLGH
101: LSAHFNPAVT LALASSQRFP LNQVPAYITV QVIGSTLASA TLRLLFDLNN DVCSKKHDVF LGSSPSGSDL QAFVMEFIIT GFLMLVVCAV TTTKRTTEEL
201: EGLIIGATVT LNVIFAGEVS GASMNPARSI GPALVWGCYK GIWIYLLAPT LGAVSGALIH KMLPSIQNAE PEFSKTGSSH KRVTDLPL
Arabidopsis Description
NIP2-1Aquaporin NIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W037]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.