Factsheet for Bra005430.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17241	Canola	cytosol, plasma membrane, plastid, vacuole	97.56	97.9
Bra005428.1-P	Field mustard	extracellular, plasma membrane, plastid, vacuole	95.47	95.8
AT2G34390.1	Thale cress	plasma membrane	86.06	85.76
AT2G29870.1	Thale cress	plastid	40.42	83.45
Bra012567.1-P	Field mustard	cytosol, peroxisome, plasma membrane	53.66	51.68
Bra013361.1-P	Field mustard	cytosol, peroxisome, plasma membrane	52.61	50.84
Bra025436.1-P	Field mustard	plastid	29.97	43.65
Bra025435.1-P	Field mustard	plastid	24.74	43.29
PGSC0003DMT400073240	Potato	cytosol, plasma membrane, vacuole	27.18	43.09
Solyc06g073590.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane	50.17	41.74
Bra028151.1-P	Field mustard	plasma membrane	40.42	40.99
PGSC0003DMT400015246	Potato	endoplasmic reticulum, peroxisome, plasma membrane	49.48	40.92
Bra035520.1-P	Field mustard	plasma membrane	45.64	40.56
TraesCS7A01G355000.1	Wheat	peroxisome	39.37	40.5
TraesCS7B01G272700.1	Wheat	plasma membrane	39.37	40.5
TraesCS7D01G367800.1	Wheat	golgi, peroxisome, plasma membrane	39.37	40.5
Bra025437.1-P	Field mustard	plasma membrane	37.63	39.13
Os06t0552700-01	Rice	cytosol, peroxisome, plastid	36.59	38.46
Bra033867.1-P	Field mustard	vacuole	44.6	37.98
KXG20157	Sorghum	golgi, nucleus, plasma membrane	37.63	37.11
Solyc02g071910.1.1	Tomato	endoplasmic reticulum, extracellular	28.92	35.93
Bra035156.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.98	35.74
Bra008442.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.98	35.74
Bra033181.1-P	Field mustard	plasma membrane	37.28	35.55
Bra000710.1-P	Field mustard	plasma membrane	36.93	35.22
Zm00001d046303_P001	Maize	golgi, peroxisome, plasma membrane	37.28	33.75
Bra020777.1-P	Field mustard	plasma membrane	29.27	30.88

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlantsGene:Bra005430	EnsemblPlants:Bra005430.1
EnsemblPlants:Bra005430.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M4CMJ2
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF155	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00025480F5	SEG:seg

Description

AT2G34390 (E=3e-114) NIP2;1, NLM4 | NIP2;1 (NOD26-LIKE INTRINSIC PROTEIN 2;1); lactate transmembrane transporter/ water channel

Coordinates

chrA05:+:5438497..5439599

Molecular Weight (calculated)

30386.4 Da

IEP (calculated)

8.714

GRAVY (calculated)

0.577

Length

287 amino acids

Sequence
(BLAST)

001: MDDISVSKSN NGNVVVLNIQ APPAVSKTQL PSSPPTSPPL LSVHFMQKLI AELVGTYYLI FAGCAAIAVN AQHNNVVTLV GIAVVWGLVV MVLVYSLGHI
101: SAHFNPAVTI ALASCKRFPL YQLPAYLIVQ VIGSTLASAT LRLLFDLNND VCSKKHDVFL GSSPSGTDLQ AFGMEFIITG FLMIVVCAVT TSKRTTKELE
201: GLIIGATVTL NVIFAGEVSG ASMNPARSIG PALVWGCYQG IWIYLLAPTL GAVSAALIHK LLPATQKANP EFSKTGSSHK RVTDLPL

Best Arabidopsis Sequence Match ( AT2G34390.1 )
(BLAST)

001: MDDISVSKSN HGNVVVLNIK ASSLADTSLP SNKHESSSPP LLSVHFLQKL LAELVGTYYL IFAGCAAIAV NAQHNHVVTL VGIAVVWGIV IMVLVYCLGH
101: LSAHFNPAVT LALASSQRFP LNQVPAYITV QVIGSTLASA TLRLLFDLNN DVCSKKHDVF LGSSPSGSDL QAFVMEFIIT GFLMLVVCAV TTTKRTTEEL
201: EGLIIGATVT LNVIFAGEVS GASMNPARSI GPALVWGCYK GIWIYLLAPT LGAVSGALIH KMLPSIQNAE PEFSKTGSSH KRVTDLPL

Arabidopsis Description

NIP2-1Aquaporin NIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W037]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.