Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99689 | Canola | extracellular | 70.61 | 95.27 |
| Bra025437.1-P | Field mustard | plasma membrane | 99.12 | 81.88 |
| CDY65403 | Canola | plasma membrane | 89.91 | 72.44 |
| CDX99688 | Canola | plasma membrane | 89.04 | 71.73 |
| CDX74558 | Canola | plasma membrane | 85.96 | 69.26 |
| CDY01700 | Canola | plasma membrane | 85.96 | 69.26 |
| PGSC0003DMT400078773 | Potato | cytoskeleton, cytosol, plasma membrane | 75.88 | 64.79 |
| Solyc02g091420.2.1 | Tomato | plasma membrane | 73.68 | 62.92 |
| KRH73019 | Soybean | cytosol, peroxisome, plasma membrane | 64.91 | 56.7 |
| KRH15118 | Soybean | plasma membrane | 64.91 | 56.7 |
| CDY69767 | Canola | plasma membrane | 64.04 | 54.68 |
| CDY72002 | Canola | plastid | 19.74 | 52.94 |
| CDY51581 | Canola | plastid | 15.35 | 48.61 |
| CDY16269 | Canola | plastid | 15.35 | 48.61 |
| CDX98596 | Canola | cytosol, peroxisome, plasma membrane | 59.21 | 45.3 |
| CDY01565 | Canola | cytosol, peroxisome, plasma membrane | 59.21 | 45.3 |
| CDX78905 | Canola | cytosol, peroxisome, plasma membrane | 58.77 | 45.12 |
| CDX99411 | Canola | cytosol, peroxisome, plasma membrane | 58.33 | 44.78 |
| CDY35532 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.88 | 41.28 |
| CDY41749 | Canola | plasma membrane | 53.07 | 40.88 |
| Solyc02g063310.2.1 | Tomato | cytosol, extracellular, vacuole | 23.25 | 38.69 |
| VIT_14s0006g01560.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 19.74 | 38.46 |
| CDX84114 | Canola | plasma membrane | 53.07 | 36.23 |
| CDX67591 | Canola | plasma membrane | 47.37 | 35.88 |
| CDY35528 | Canola | cytosol | 21.05 | 35.56 |
| CDX84320 | Canola | extracellular, plasma membrane, plastid, vacuole | 44.3 | 35.31 |
| CDY05100 | Canola | plasma membrane | 46.49 | 35.22 |
| CDX90757 | Canola | plasma membrane | 46.49 | 35.22 |
| CDY17241 | Canola | cytosol, plasma membrane, plastid, vacuole | 43.86 | 34.97 |
| CDY25253 | Canola | plasma membrane | 46.05 | 34.88 |
| CDX94261 | Canola | plasma membrane | 46.05 | 34.88 |
| CDY17243 | Canola | extracellular, plasma membrane, plastid, vacuole | 43.42 | 34.62 |
| CDX84321 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 43.42 | 34.62 |
| CDY39946 | Canola | cytosol, peroxisome, plasma membrane | 46.05 | 34.43 |
| CDX87340 | Canola | cytosol, peroxisome, plasma membrane | 46.05 | 34.43 |
| CDY53224 | Canola | cytosol, peroxisome, plasma membrane | 45.61 | 34.1 |
| CDY29921 | Canola | vacuole | 46.93 | 33.97 |
| CDY35531 | Canola | vacuole | 46.49 | 33.87 |
| CDY66949 | Canola | cytosol, peroxisome, plasma membrane | 45.18 | 33.77 |
| CDY29922 | Canola | peroxisome, plasma membrane, vacuole | 46.93 | 32.62 |
| CDY27709 | Canola | plasma membrane | 38.16 | 31.99 |
| CDY05231 | Canola | plasma membrane | 38.16 | 31.99 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | GO:A0A078JVD3 | UniProt:A0A078JVD3 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr |
| EnsemblPlants:CDY71538 | ProteinID:CDY71538 | ProteinID:CDY71538.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| EnsemblPlantsGene:GSBRNA2T00016903001 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 |
| ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF185 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix |
| UniParc:UPI0004EE3BFA | SEG:seg | : | : | : | : |
Description
BnaA04g27980DBnaA04g27980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVD3]
Coordinates
chrLK046273:-:841..2499
Molecular Weight (calculated)
24387.4 Da
IEP (calculated)
9.745
GRAVY (calculated)
0.841
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGTYFVIFS GCGVVVVNVL YGGTVTFPGV CVTWGLIVMV MIYSTGHISG AHFNPAVTLT FAIFRRFPWY QVPLYVGAQL AGSLLASLTL RLMFKVTPEA
101: YFGTTPTDSA ARALVAEIII SFLLMFVISG VSTDSRAIGE LAGIAVGMTI MLNVFVAGPI SGASMNPARS LGPAIVMGVY KDIWVYIVGP IAGVMAGGFV
201: YNFIRFTDKP LRELTKSASF LRSISPKQ
101: YFGTTPTDSA ARALVAEIII SFLLMFVISG VSTDSRAIGE LAGIAVGMTI MLNVFVAGPI SGASMNPARS LGPAIVMGVY KDIWVYIVGP IAGVMAGGFV
201: YNFIRFTDKP LRELTKSASF LRSISPKQ
001: MSSHSDEIEE EQISRIEKGK GKDCQGGIET VICTSPSIVC LTQKLIAEMI GTYFIVFSGC GVVVVNVLYG GTITFPGICV TWGLIVMVMI YSTGHISGAH
101: FNPAVTVTFA IFRRFPWHQV PLYIGAQFAG SLLASLTLRL MFKVTPEAFF GTTPADSPAR ALVAEIIISF LLMFVISGVA TDNRAVGELA GIAVGMTIMV
201: NVFVAGPISG ASMNPARSLG PALVMGVYKH IWVYIVGPVL GVISGGFVYN LIRFTDKPLR ELTKSASFLR AVSPSHKGSS SKT
101: FNPAVTVTFA IFRRFPWHQV PLYIGAQFAG SLLASLTLRL MFKVTPEAFF GTTPADSPAR ALVAEIIISF LLMFVISGVA TDNRAVGELA GIAVGMTIMV
201: NVFVAGPISG ASMNPARSLG PALVMGVYKH IWVYIVGPVL GVISGGFVYN LIRFTDKPLR ELTKSASFLR AVSPSHKGSS SKT
Arabidopsis Description
NIP4-1Putative aquaporin NIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIZ9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.