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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035520.1-P Field mustard plasma membrane 95.95 87.93
CDX84114 Canola plasma membrane 95.61 84.73
CDY35532 Canola endoplasmic reticulum, extracellular, vacuole 75.0 79.0
AT1G31885.1 Thale cress vacuole 84.46 77.4
CDY35531 Canola vacuole 74.66 70.61
CDY29921 Canola vacuole 74.66 70.16
CDY35528 Canola cytosol 29.05 63.7
CDY29922 Canola peroxisome, plasma membrane, vacuole 62.84 56.71
CDY71538 Canola extracellular, plasma membrane, vacuole 40.88 53.07
CDX99689 Canola extracellular 28.04 49.11
CDY72002 Canola plastid 13.85 48.24
CDX78905 Canola cytosol, peroxisome, plasma membrane 47.3 47.14
CDX98596 Canola cytosol, peroxisome, plasma membrane 47.3 46.98
CDY01565 Canola cytosol, peroxisome, plasma membrane 47.3 46.98
CDY65403 Canola plasma membrane 44.26 46.29
CDX99688 Canola plasma membrane 44.26 46.29
CDX74558 Canola plasma membrane 43.92 45.94
CDY01700 Canola plasma membrane 43.92 45.94
CDX99411 Canola cytosol, peroxisome, plasma membrane 45.27 45.12
CDX84320 Canola extracellular, plasma membrane, plastid, vacuole 43.58 45.1
CDY17243 Canola extracellular, plasma membrane, plastid, vacuole 43.24 44.76
CDX84321 Canola endoplasmic reticulum, plasma membrane, plastid, vacuole 42.91 44.41
CDY17241 Canola cytosol, plasma membrane, plastid, vacuole 42.57 44.06
TraesCS7D01G367800.1 Wheat golgi, peroxisome, plasma membrane 40.88 43.37
TraesCS7B01G272700.1 Wheat plasma membrane 40.88 43.37
CDY16269 Canola plastid 10.47 43.06
CDY51581 Canola plastid 10.47 43.06
TraesCS7A01G355000.1 Wheat peroxisome 39.53 41.94
Solyc06g073590.2.1 Tomato endoplasmic reticulum, peroxisome, plasma membrane 48.65 41.74
KXG20157 Sorghum golgi, nucleus, plasma membrane 40.54 41.24
PGSC0003DMT400015246 Potato endoplasmic reticulum, peroxisome, plasma membrane 47.64 40.63
Os06t0552700-01 Rice cytosol, peroxisome, plastid 36.82 39.93
CDY25253 Canola plasma membrane 39.86 39.2
CDX67591 Canola plasma membrane 39.86 39.2
CDX94261 Canola plasma membrane 39.86 39.2
CDX90757 Canola plasma membrane 39.53 38.87
CDY05100 Canola plasma membrane 39.19 38.54
CDY66949 Canola cytosol, peroxisome, plasma membrane 39.53 38.36
CDY53224 Canola cytosol, peroxisome, plasma membrane 39.19 38.03
CDX87340 Canola cytosol, peroxisome, plasma membrane 38.85 37.7
CDY39946 Canola cytosol, peroxisome, plasma membrane 38.85 37.7
Solyc02g071910.1.1 Tomato endoplasmic reticulum, extracellular 29.39 37.66
Zm00001d046303_P001 Maize golgi, peroxisome, plasma membrane 38.18 35.65
CDY27709 Canola plasma membrane 31.08 33.82
CDY05231 Canola plasma membrane 31.08 33.82
CDY69767 Canola plasma membrane 30.07 33.33
PGSC0003DMT400073240 Potato cytosol, plasma membrane, vacuole 20.27 33.15
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.1GO:A0A078HWI0UniProt:A0A078HWI0InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY41749ProteinID:CDY41749ProteinID:CDY41749.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00073615001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PFscan:PS51257PANTHER:PTHR19139PANTHER:PTHR19139:SF155SUPFAM:SSF81338TIGRFAMs:TIGR00861
TMHMM:TMhelixUniParc:UPI0004EEC71E::::
Description
BnaA08g07040DBnaA08g07040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWI0]
Coordinates
chrLK032505:-:109404..110959
Molecular Weight (calculated)
32099.2 Da
IEP (calculated)
9.058
GRAVY (calculated)
0.332
Length
296 amino acids
Sequence
(BLAST)
001: MIMSRNIISQ KRRKHSLLIG EFVGTFSLIF AGCAAIVVND TYGKAVTLPG IALVWGLTVM VMIYSIGHVS GAHFNPAVSI AFASSRKFPF KQVPGYIAAQ
101: LLGSTLAAEA LRLVFHLDDN VCSLKGDIYV GTYPSSSNTA TFVMEFITTF NLMFVISAVA TDKRANGSFA GIAIGATVVL DILFCGPISG ASMNPARSLG
201: PALIWGCYKD LWLYIVSPVI GALTGAWTYD MLRSTKKSYG EIIRPNCNKI SSRDRQEASQ DEICVLQVVN QANRKEFICS SPTDINDKRN VTCKLP
Best Arabidopsis Sequence Match ( AT1G31885.1 )
(BLAST)
001: MAEISDITTQ TQTVVLDIEN YQSIDDSRSS DLSAPLVSVS FVQKLIGEFV GTFTMIFAGC SAIVVNETYG KPVTLPGIAL VWGLVVTVMI YSIGHVSGAH
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA
Arabidopsis Description
NIP3-1Aquaporin NIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6T0]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.