Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035520.1-P | Field mustard | plasma membrane | 85.45 | 85.45 |
| CDY41749 | Canola | plasma membrane | 77.4 | 84.46 |
| CDX84114 | Canola | plasma membrane | 85.45 | 82.63 |
| CDY35531 | Canola | vacuole | 72.45 | 74.76 |
| Bra033867.1-P | Field mustard | vacuole | 77.71 | 74.48 |
| CDY35532 | Canola | endoplasmic reticulum, extracellular, vacuole | 64.71 | 74.38 |
| CDY29921 | Canola | vacuole | 72.45 | 74.29 |
| CDY35528 | Canola | cytosol | 26.01 | 62.22 |
| CDY29922 | Canola | peroxisome, plasma membrane, vacuole | 59.13 | 58.23 |
| AT4G18910.1 | Thale cress | golgi, peroxisome, vacuole | 44.89 | 49.32 |
| AT2G34390.1 | Thale cress | plasma membrane | 42.72 | 47.92 |
| AT5G37810.1 | Thale cress | plasma membrane | 41.18 | 47.0 |
| AT4G19030.1 | Thale cress | plasma membrane | 41.49 | 45.27 |
| TraesCS7D01G367800.1 | Wheat | golgi, peroxisome, plasma membrane | 39.01 | 45.16 |
| TraesCS7B01G272700.1 | Wheat | plasma membrane | 38.7 | 44.8 |
| TraesCS7A01G355000.1 | Wheat | peroxisome | 37.77 | 43.73 |
| AT2G29870.1 | Thale cress | plastid | 18.58 | 43.17 |
| KXG20157 | Sorghum | golgi, nucleus, plasma membrane | 38.39 | 42.61 |
| Solyc06g073590.2.1 | Tomato | endoplasmic reticulum, peroxisome, plasma membrane | 45.51 | 42.61 |
| PGSC0003DMT400015246 | Potato | endoplasmic reticulum, peroxisome, plasma membrane | 44.89 | 41.79 |
| Os06t0552700-01 | Rice | cytosol, peroxisome, plastid | 35.29 | 41.76 |
| AT5G37820.2 | Thale cress | plastid | 40.56 | 41.07 |
| Solyc02g071910.1.1 | Tomato | endoplasmic reticulum, extracellular | 27.24 | 38.1 |
| Zm00001d046303_P001 | Maize | golgi, peroxisome, plasma membrane | 36.84 | 37.54 |
| AT4G10380.1 | Thale cress | cytosol | 34.98 | 37.17 |
| PGSC0003DMT400073240 | Potato | cytosol, plasma membrane, vacuole | 20.74 | 37.02 |
| AT1G80760.1 | Thale cress | golgi, peroxisome, plasma membrane | 34.67 | 36.72 |
| AT3G06100.1 | Thale cress | plasma membrane | 30.03 | 35.27 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | EntrezGene:840079 | ProteinID:AAG50717.1 | ProteinID:AEE31413.1 | ProteinID:ANM61125.1 |
| ArrayExpress:AT1G31885 | EnsemblPlantsGene:AT1G31885 | RefSeq:AT1G31885 | TAIR:AT1G31885 | RefSeq:AT1G31885-TAIR-G | EnsemblPlants:AT1G31885.1 |
| TAIR:AT1G31885.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 | GO:GO:0008150 |
| GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | Symbol:NIP3;1 | RefSeq:NP_001323362.1 | RefSeq:NP_174472.2 |
| PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF155 | UniProt:Q9C6T0 |
| SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0001738FF8 | : | : |
Description
NIP3-1Aquaporin NIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6T0]
Coordinates
chr1:+:11450337..11452068
Molecular Weight (calculated)
34580.7 Da
IEP (calculated)
5.715
GRAVY (calculated)
0.401
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEISDITTQ TQTVVLDIEN YQSIDDSRSS DLSAPLVSVS FVQKLIGEFV GTFTMIFAGC SAIVVNETYG KPVTLPGIAL VWGLVVTVMI YSIGHVSGAH
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.