Subcellular Localization
min:
: max
Winner_takes_all: golgi, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87340 | Canola | cytosol, peroxisome, plasma membrane | 96.07 | 96.07 |
| CDY39946 | Canola | cytosol, peroxisome, plasma membrane | 96.07 | 96.07 |
| Bra035156.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 95.74 | 95.74 |
| KRH15764 | Soybean | endoplasmic reticulum, extracellular, plastid, vacuole | 26.56 | 77.88 |
| Solyc03g117050.2.1 | Tomato | plasma membrane | 77.7 | 77.45 |
| KRH09661 | Soybean | plasma membrane, plastid | 77.05 | 77.3 |
| PGSC0003DMT400036625 | Potato | plasma membrane | 77.05 | 76.8 |
| KRH44534 | Soybean | plastid | 74.43 | 74.18 |
| AT4G10380.1 | Thale cress | cytosol | 64.59 | 64.8 |
| KRH47366 | Soybean | cytosol, plasma membrane, vacuole | 44.92 | 63.13 |
| KRH47369 | Soybean | mitochondrion, plastid | 37.7 | 62.5 |
| VIT_09s0070g00080.t01 | Wine grape | plastid | 72.13 | 62.15 |
| KRH47396 | Soybean | plasma membrane | 36.72 | 61.2 |
| AT5G37810.1 | Thale cress | plasma membrane | 37.7 | 40.64 |
| AT4G18910.1 | Thale cress | golgi, peroxisome, vacuole | 38.69 | 40.14 |
| AT4G19030.1 | Thale cress | plasma membrane | 38.03 | 39.19 |
| AT5G37820.2 | Thale cress | plastid | 38.36 | 36.68 |
| AT2G34390.1 | Thale cress | plasma membrane | 34.1 | 36.11 |
| AT2G29870.1 | Thale cress | plastid | 16.39 | 35.97 |
| AT1G31885.1 | Thale cress | vacuole | 36.72 | 34.67 |
| AT3G06100.1 | Thale cress | plasma membrane | 30.16 | 33.45 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | EntrezGene:844415 | ProteinID:AAF14664.1 | ProteinID:AEE36445.1 | ArrayExpress:AT1G80760 |
| EnsemblPlantsGene:AT1G80760 | RefSeq:AT1G80760 | TAIR:AT1G80760 | RefSeq:AT1G80760-TAIR-G | EnsemblPlants:AT1G80760.1 | TAIR:AT1G80760.1 |
| InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | Unigene:At.62180 | EMBL:BT020229 | EMBL:BT021924 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 |
| GO:GO:0007154 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0015168 |
| GO:GO:0015204 | GO:GO:0015267 | GO:GO:0015793 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0035445 |
| GO:GO:0046713 | GO:GO:0046715 | GO:GO:0055085 | GO:GO:0071918 | GO:GO:0080029 | InterPro:IPR023271 |
| InterPro:MIP | InterPro:MIP_CS | Symbol:NIP6;1 | RefSeq:NP_178191.1 | PFAM:PF00230 | PO:PO:0000013 |
| PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0005020 |
| PO:PO:0005417 | PO:PO:0006325 | PO:PO:0007095 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0020141 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF170 | UniProt:Q9SAI4 | SUPFAM:SSF81338 | TMHMM:TMhelix | UniParc:UPI00000A5F6F | SEG:seg |
Description
NIP6-1Aquaporin NIP6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI4]
Coordinates
chr1:-:30350539..30352208
Molecular Weight (calculated)
31846.8 Da
IEP (calculated)
8.326
GRAVY (calculated)
0.374
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.