Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98596 | Canola | cytosol, peroxisome, plasma membrane | 90.48 | 89.26 |
| Bra012567.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 90.48 | 89.26 |
| CDX78905 | Canola | cytosol, peroxisome, plasma membrane | 90.14 | 89.23 |
| Bra013361.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 89.8 | 88.89 |
| CDY01565 | Canola | cytosol, peroxisome, plasma membrane | 89.8 | 88.59 |
| CDX99411 | Canola | cytosol, peroxisome, plasma membrane | 89.46 | 88.55 |
| AT4G19030.1 | Thale cress | plasma membrane | 80.27 | 79.73 |
| VIT_10s0003g01830.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 68.71 | 71.63 |
| KRH59036 | Soybean | plasma membrane | 65.31 | 71.11 |
| KRH42926 | Soybean | plasma membrane | 65.99 | 70.8 |
| KRH59035 | Soybean | plasma membrane | 64.97 | 70.48 |
| KRH21197 | Soybean | cytosol, peroxisome, plasma membrane | 65.31 | 70.33 |
| KRH11076 | Soybean | cytosol | 64.63 | 69.6 |
| PGSC0003DMT400071510 | Potato | plasma membrane | 63.61 | 67.51 |
| Solyc03g005980.2.1 | Tomato | plasma membrane | 63.27 | 67.15 |
| KRH42923 | Soybean | extracellular | 61.22 | 66.42 |
| PGSC0003DMT400073246 | Potato | plasma membrane | 63.61 | 64.48 |
| Solyc02g071920.2.1 | Tomato | plasma membrane | 63.27 | 64.14 |
| AT2G34390.1 | Thale cress | plasma membrane | 51.7 | 52.78 |
| KRH45251 | Soybean | extracellular | 16.33 | 52.75 |
| AT5G37810.1 | Thale cress | plasma membrane | 48.64 | 50.53 |
| AT2G29870.1 | Thale cress | plastid | 23.13 | 48.92 |
| AT5G37820.2 | Thale cress | plastid | 49.32 | 45.45 |
| AT1G31885.1 | Thale cress | vacuole | 49.32 | 44.89 |
| AT4G10380.1 | Thale cress | cytosol | 40.14 | 38.82 |
| AT1G80760.1 | Thale cress | golgi, peroxisome, plasma membrane | 40.14 | 38.69 |
| HORVU7Hr1G088900.1 | Barley | cytosol, golgi, plasma membrane | 25.51 | 35.55 |
| AT3G06100.1 | Thale cress | plasma membrane | 30.27 | 32.36 |
| GSMUA_Achr4P10230_001 | Banana | plastid | 20.07 | 18.79 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | EntrezGene:827626 | ProteinID:AEE84106.1 | EMBL:AJ250668 | ArrayExpress:AT4G18910 |
| EnsemblPlantsGene:AT4G18910 | RefSeq:AT4G18910 | TAIR:AT4G18910 | RefSeq:AT4G18910-TAIR-G | EnsemblPlants:AT4G18910.1 | TAIR:AT4G18910.1 |
| EMBL:AY072380 | EMBL:AY084720 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | EMBL:BT000096 | ProteinID:CAA16748.1 |
| ProteinID:CAB78893.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 | GO:GO:0008150 | GO:GO:0015105 | GO:GO:0015250 |
| GO:GO:0015267 | GO:GO:0015700 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046685 | GO:GO:0055085 |
| GO:GO:0080170 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | Symbol:NIP1;2 | RefSeq:NP_193626.1 |
| PFAM:PF00230 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF189 | UniProt:Q8LFP7 |
| SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI00000AC495 | SEG:seg | : |
Description
NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
Coordinates
chr4:+:10366044..10368510
Molecular Weight (calculated)
31271.2 Da
IEP (calculated)
8.590
GRAVY (calculated)
0.446
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.