Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78905 | Canola | cytosol, peroxisome, plasma membrane | 81.08 | 80.81 |
| Bra012567.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 81.08 | 80.54 |
| AT4G18910.1 | Thale cress | golgi, peroxisome, vacuole | 79.73 | 80.27 |
| CDX98596 | Canola | cytosol, peroxisome, plasma membrane | 80.74 | 80.2 |
| CDY01565 | Canola | cytosol, peroxisome, plasma membrane | 80.41 | 79.87 |
| CDX99411 | Canola | cytosol, peroxisome, plasma membrane | 79.73 | 79.46 |
| Bra013361.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 79.73 | 79.46 |
| KRH59035 | Soybean | plasma membrane | 63.85 | 69.74 |
| VIT_10s0003g01830.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 64.53 | 67.73 |
| KRH59036 | Soybean | plasma membrane | 61.49 | 67.41 |
| KRH42926 | Soybean | plasma membrane | 62.16 | 67.15 |
| KRH42923 | Soybean | extracellular | 61.15 | 66.79 |
| KRH11076 | Soybean | cytosol | 61.15 | 66.3 |
| KRH21197 | Soybean | cytosol, peroxisome, plasma membrane | 61.15 | 66.3 |
| PGSC0003DMT400071510 | Potato | plasma membrane | 60.47 | 64.62 |
| Solyc03g005980.2.1 | Tomato | plasma membrane | 59.8 | 63.9 |
| Solyc02g071920.2.1 | Tomato | plasma membrane | 59.46 | 60.69 |
| PGSC0003DMT400073246 | Potato | plasma membrane | 59.46 | 60.69 |
| KRH45251 | Soybean | extracellular | 18.24 | 59.34 |
| AT2G34390.1 | Thale cress | plasma membrane | 51.35 | 52.78 |
| AT2G29870.1 | Thale cress | plastid | 23.99 | 51.08 |
| AT5G37810.1 | Thale cress | plasma membrane | 48.31 | 50.53 |
| AT5G37820.2 | Thale cress | plastid | 47.64 | 44.2 |
| AT1G31885.1 | Thale cress | vacuole | 45.27 | 41.49 |
| AT1G80760.1 | Thale cress | golgi, peroxisome, plasma membrane | 39.19 | 38.03 |
| AT4G10380.1 | Thale cress | cytosol | 38.51 | 37.5 |
| HORVU7Hr1G088900.1 | Barley | cytosol, golgi, plasma membrane | 23.65 | 33.18 |
| AT3G06100.1 | Thale cress | plasma membrane | 29.39 | 31.64 |
| GSMUA_Achr4P10230_001 | Banana | plastid | 20.61 | 19.43 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | EntrezGene:827641 | UniProt:A0A178V521 | UniProt:A0A221J3M9 | ProteinID:AEE84127.1 |
| ProteinID:ASM61039.1 | ProteinID:ASM61043.1 | ProteinID:ASM61045.1 | ProteinID:ASM61046.1 | ProteinID:ASM61047.1 | ProteinID:ASM61048.1 |
| ProteinID:ASM61049.1 | ArrayExpress:AT4G19030 | EnsemblPlantsGene:AT4G19030 | RefSeq:AT4G19030 | TAIR:AT4G19030 | RefSeq:AT4G19030-TAIR-G |
| EnsemblPlants:AT4G19030.1 | TAIR:AT4G19030.1 | EMBL:AY063796 | EMBL:AY084497 | EMBL:AY117197 | InterPro:Aquaporin-like |
| InterPro:Aquaporin_transptr | Unigene:At.5405 | ProteinID:CAA16760.2 | ProteinID:CAB78905.1 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 |
| GO:GO:0006810 | GO:GO:0006833 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0015105 | GO:GO:0015250 |
| GO:GO:0015267 | GO:GO:0015700 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031347 | GO:GO:0046685 |
| GO:GO:0055085 | GO:GO:0080170 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | Symbol:NLM1 |
| RefSeq:NP_567572.1 | ProteinID:OAP00914.1 | PFAM:PF00230 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0002000 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0020121 | PO:PO:0020127 |
| PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF155 | UniProt:Q8VZW1 | SUPFAM:SSF81338 |
| TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI000005EB4B | EMBL:Y07625 | : | : |
Description
NIP1-1NIP11 [Source:UniProtKB/TrEMBL;Acc:A0A221J3M9]
Coordinates
chr4:-:10421521..10423508
Molecular Weight (calculated)
31716.8 Da
IEP (calculated)
6.782
GRAVY (calculated)
0.489
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MADISGNGYG NAREEVVMVN LKDEVEHQQE MEDIHNPRPL KKQDSLLSVS VPFLQKLIAE FLGTYFLVFT GCASVVVNMQ NDNVVTLPGI AIVWGLTIMV
101: LIYSLGHISG AHINPAVTIA FASCGRFPLK QVPAYVISQV IGSTLAAATL RLLFGLDHDV CSGKHDVFIG SSPVGSDLQA FTMEFIVTFY LMFIISGVAT
201: DNRAIGELAG LAIGSTVLLN VLIAAPVSSA SMNPGRSLGP ALVYGCYKGI WIYLVAPTLG AIAGAWVYNT VRYTDKPLRE ITKSGSFLKT VRIGST
101: LIYSLGHISG AHINPAVTIA FASCGRFPLK QVPAYVISQV IGSTLAAATL RLLFGLDHDV CSGKHDVFIG SSPVGSDLQA FTMEFIVTFY LMFIISGVAT
201: DNRAIGELAG LAIGSTVLLN VLIAAPVSSA SMNPGRSLGP ALVYGCYKGI WIYLVAPTLG AIAGAWVYNT VRYTDKPLRE ITKSGSFLKT VRIGST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.