Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g005980.2.1 | Tomato | plasma membrane | 98.56 | 98.56 |
| PGSC0003DMT400073246 | Potato | plasma membrane | 83.39 | 79.66 |
| VIT_10s0003g01830.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 76.53 | 75.18 |
| KRH21197 | Soybean | cytosol, peroxisome, plasma membrane | 71.12 | 72.16 |
| KRH11076 | Soybean | cytosol | 70.76 | 71.79 |
| KRH59035 | Soybean | plasma membrane | 66.43 | 67.9 |
| KRH59036 | Soybean | plasma membrane | 66.06 | 67.78 |
| KRH42926 | Soybean | plasma membrane | 64.98 | 65.69 |
| KRH42923 | Soybean | extracellular | 63.54 | 64.94 |
| CDY01565 | Canola | cytosol, peroxisome, plasma membrane | 68.59 | 63.76 |
| Bra012567.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 68.59 | 63.76 |
| CDX98596 | Canola | cytosol, peroxisome, plasma membrane | 68.59 | 63.76 |
| KRH45251 | Soybean | extracellular | 20.94 | 63.74 |
| CDX78905 | Canola | cytosol, peroxisome, plasma membrane | 68.23 | 63.64 |
| AT4G18910.1 | Thale cress | golgi, peroxisome, vacuole | 67.51 | 63.61 |
| Bra013361.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 67.87 | 63.3 |
| CDX99411 | Canola | cytosol, peroxisome, plasma membrane | 66.79 | 62.29 |
| AT4G19030.1 | Thale cress | plasma membrane | 64.62 | 60.47 |
| PGSC0003DMT400078773 | Potato | cytoskeleton, cytosol, plasma membrane | 55.6 | 57.68 |
| PGSC0003DMT400078337 | Potato | plasma membrane | 56.32 | 57.35 |
| PGSC0003DMT400022061 | Potato | peroxisome, plasma membrane, plastid, vacuole | 42.24 | 45.0 |
| PGSC0003DMT400073240 | Potato | cytosol, plasma membrane, vacuole | 28.88 | 44.2 |
| PGSC0003DMT400015246 | Potato | endoplasmic reticulum, peroxisome, plasma membrane | 55.23 | 44.09 |
| PGSC0003DMT400014852 | Potato | cytosol, plasma membrane, plastid | 43.68 | 40.88 |
| PGSC0003DMT400035640 | Potato | endoplasmic reticulum, extracellular | 24.91 | 38.76 |
| PGSC0003DMT400036625 | Potato | plasma membrane | 41.16 | 37.25 |
| PGSC0003DMT400035638 | Potato | cytosol, golgi, plasma membrane | 17.33 | 36.36 |
| HORVU7Hr1G088900.1 | Barley | cytosol, golgi, plasma membrane | 25.99 | 34.12 |
| PGSC0003DMT400084932 | Potato | plasma membrane | 33.94 | 32.75 |
| GSMUA_Achr4P10230_001 | Banana | plastid | 24.19 | 21.34 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:102581997 | MapMan:24.3.1.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR023271 | UniProt:M1CNX1 | InterPro:MIP | InterPro:MIP_CS |
| PFAM:PF00230 | EnsemblPlantsGene:PGSC0003DMG400027819 | PGSC:PGSC0003DMG400027819 | EnsemblPlants:PGSC0003DMT400071510 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF189 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0002957680 |
| RefSeq:XP_006356091.1 | : | : | : | : | : |
Description
Aquaporin NIP1.1 [Source:PGSC_GENE;Acc:PGSC0003DMG400027819]
Coordinates
chr3:-:959235..962334
Molecular Weight (calculated)
29659.1 Da
IEP (calculated)
9.551
GRAVY (calculated)
0.440
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHQINVNG NINHGVSLNI KEDHDLNNHK ESSSTSSFLT VPFIQKIIAE MIGTYFLIFA GCGSVVVNAD KGMITFPGIA ITWGLVVMVM VYSVGHISGA
101: HFNPAVTIAF ASVKRFPWKQ VPAYVAAQVL GATLASGTLR LIFNGKHDHF AGTLPSGTDF QSFVVEFIIT FYLMFVISGV ATDNRAIGEL AGLAVGATIL
201: LNVMFTGPIS GASMNPARSL GPAIVSSHYK GLWIYLVSPT LGAIAGAWVY NIIRFTDKPL REITKSGSFL KSKNSST
101: HFNPAVTIAF ASVKRFPWKQ VPAYVAAQVL GATLASGTLR LIFNGKHDHF AGTLPSGTDF QSFVVEFIIT FYLMFVISGV ATDNRAIGEL AGLAVGATIL
201: LNVMFTGPIS GASMNPARSL GPAIVSSHYK GLWIYLVSPT LGAIAGAWVY NIIRFTDKPL REITKSGSFL KSKNSST
001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
Arabidopsis Description
NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.