Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 5
- golgi 1
- extracellular 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08230.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT4G08230.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g013100.1.1 | Tomato | nucleus | 60.2 | 93.65 |
| VIT_18s0001g03450.t01 | Wine grape | mitochondrion | 83.67 | 73.87 |
| KRH18786 | Soybean | mitochondrion | 78.57 | 70.64 |
| KRH16578 | Soybean | mitochondrion | 77.55 | 69.72 |
| Bra000643.1-P | Field mustard | mitochondrion | 73.47 | 64.29 |
| CDY34007 | Canola | mitochondrion | 73.47 | 64.29 |
| TraesCS4A01G089100.1 | Wheat | mitochondrion | 68.37 | 62.62 |
| TraesCS4B01G215200.1 | Wheat | mitochondrion | 68.37 | 62.62 |
| AT4G08230.1 | Thale cress | cytosol | 70.41 | 61.06 |
| TraesCS4D01G215700.1 | Wheat | mitochondrion | 63.27 | 59.05 |
| Os03t0263700-01 | Rice | cytosol | 64.29 | 58.88 |
| GSMUA_Achr6P10030_001 | Banana | nucleus | 41.84 | 58.57 |
| Zm00001d028531_P001 | Maize | plasma membrane | 64.29 | 57.27 |
| EER95136 | Sorghum | mitochondrion | 64.29 | 55.26 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, plastid | 65.31 | 55.17 |
| Zm00001d047857_P001 | Maize | cytosol, extracellular, golgi, mitochondrion | 61.22 | 54.05 |
| CDX83140 | Canola | mitochondrion | 73.47 | 50.0 |
| HORVU4Hr1G061190.1 | Barley | mitochondrion | 67.35 | 39.52 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400036564 | EnsemblPlantsGene:PGSC0003DMG400014092 | EntrezGene:102587611 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Se_SelK/SelG | PANTHER:PTHR16875 | PFAM:PD353114 | PFAM:PF10961 | PGSC:PGSC0003DMG400014092 | RefSeq:XP_006351881.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002963F19 | UniProt:M1B3U3 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014092]
Coordinates
chr11:-:10517464..10523506
Molecular Weight (calculated)
10630.8 Da
IEP (calculated)
10.154
GRAVY (calculated)
-0.378
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MAYVERGVVK SKRSIWRLKT MTDFFWSIIN IINVFFVTMF SMEKTDSYKK GSGSSKKWDG GGPGSGPYGG GPRGPPRGMD NVRGIDHSSL PACGSCCG
001: MAYVEGGVVK AKRPIWRLRT IKDFFLSIIN LIQVFFVTMF SMEKSDAYRK GSKPNKKWGG GMGGGGGGGG GSGGGGGGRG GGPPRGGLDN VRGLNDIRGA
101: DHNSLPACGS CCG
101: DHNSLPACGS CCG
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q8VY68]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.