Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95136 | Sorghum | mitochondrion | 98.18 | 94.74 |
| Zm00001d047857_P001 | Maize | cytosol, extracellular, golgi, mitochondrion | 89.09 | 88.29 |
| Os03t0263700-01 | Rice | cytosol | 82.73 | 85.05 |
| TraesCS4B01G215200.1 | Wheat | mitochondrion | 81.82 | 84.11 |
| TraesCS4A01G089100.1 | Wheat | mitochondrion | 81.82 | 84.11 |
| TraesCS4D01G215700.1 | Wheat | mitochondrion | 77.27 | 80.95 |
| KRH18786 | Soybean | mitochondrion | 64.55 | 65.14 |
| PGSC0003DMT400036564 | Potato | mitochondrion | 57.27 | 64.29 |
| KRH16578 | Soybean | mitochondrion | 63.64 | 64.22 |
| CDY34007 | Canola | mitochondrion | 64.55 | 63.39 |
| Bra000643.1-P | Field mustard | mitochondrion | 64.55 | 63.39 |
| GSMUA_Achr6P10030_001 | Banana | nucleus | 40.0 | 62.86 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, plastid | 65.45 | 62.07 |
| Solyc11g013100.1.1 | Tomato | nucleus | 34.55 | 60.32 |
| AT4G08230.1 | Thale cress | cytosol | 60.91 | 59.29 |
| VIT_18s0001g03450.t01 | Wine grape | mitochondrion | 57.27 | 56.76 |
| HORVU4Hr1G061190.1 | Barley | mitochondrion | 80.91 | 53.29 |
| CDX83140 | Canola | mitochondrion | 64.55 | 49.31 |
Protein Annotations
| EMBL:EU966445 | EnsemblPlants:Zm00001d028531_P001 | EnsemblPlants:Zm00001d028531_T001 | EnsemblPlantsGene:Zm00001d028531 | EntrezGene:100277047 | InterPro:Se_SelK/SelG |
| PANTHER:PTHR16875 | PFAM:PD353114 | PFAM:PF10961 | ProteinID:ONL96274.1 | SEG:seg | UniParc:UPI000182DF56 |
| UniProt:B6TN80 | MapMan:35.2 | : | : | : | : |
Description
glycine-rich protein
Coordinates
chr1:+:38338679..38342235
Molecular Weight (calculated)
11403.5 Da
IEP (calculated)
9.854
GRAVY (calculated)
-0.356
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYVERGVVK DKRTIWRLSI ISDFFRAIVN FIRIFFDTLF SVDKTDSYKK GYGAGKKWDG GPGGGGGRGP YGGGGGGFGG GGGGGRGPRT LSDIQSNDHS
101: SLPACGSCCG
101: SLPACGSCCG
001: MAYVEGGVVK AKRPIWRLRT IKDFFLSIIN LIQVFFVTMF SMEKSDAYRK GSKPNKKWGG GMGGGGGGGG GSGGGGGGRG GGPPRGGLDN VRGLNDIRGA
101: DHNSLPACGS CCG
101: DHNSLPACGS CCG
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q8VY68]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.