Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- golgi 1
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002403.1-P | |
| Bra006619.1-P | |
| Bra020182.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08230.1 | Bra002403.1-P | AT5G22290.1 | 21798944 |
| AT4G08230.1 | Bra006619.1-P | AT5G22290.1 | 21798944 |
| AT4G08230.1 | Bra020182.1-P | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34007 | Canola | mitochondrion | 100.0 | 100.0 |
| AT4G08230.1 | Thale cress | cytosol | 90.18 | 89.38 |
| KRH18786 | Soybean | mitochondrion | 77.68 | 79.82 |
| KRH16578 | Soybean | mitochondrion | 76.79 | 78.9 |
| CDX83140 | Canola | mitochondrion | 100.0 | 77.78 |
| PGSC0003DMT400036564 | Potato | mitochondrion | 64.29 | 73.47 |
| Solyc11g013100.1.1 | Tomato | nucleus | 41.07 | 73.02 |
| Os03t0263700-01 | Rice | cytosol | 65.18 | 68.22 |
| TraesCS4A01G089100.1 | Wheat | mitochondrion | 63.39 | 66.36 |
| TraesCS4B01G215200.1 | Wheat | mitochondrion | 63.39 | 66.36 |
| VIT_18s0001g03450.t01 | Wine grape | mitochondrion | 64.29 | 64.86 |
| Zm00001d028531_P001 | Maize | plasma membrane | 63.39 | 64.55 |
| TraesCS4D01G215700.1 | Wheat | mitochondrion | 59.82 | 63.81 |
| EER95136 | Sorghum | mitochondrion | 63.39 | 62.28 |
| GSMUA_Achr6P10030_001 | Banana | nucleus | 37.5 | 60.0 |
| Zm00001d047857_P001 | Maize | cytosol, extracellular, golgi, mitochondrion | 58.04 | 58.56 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, plastid | 58.04 | 56.03 |
| HORVU4Hr1G061190.1 | Barley | mitochondrion | 62.5 | 41.92 |
Protein Annotations
| EnsemblPlants:Bra000643.1 | EnsemblPlants:Bra000643.1-P | EnsemblPlantsGene:Bra000643 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Se_SelK/SelG | PANTHER:PTHR16875 | PFAM:PF10961 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002540267 |
| UniProt:M4C8W5 | MapMan:35.2 | : | : | : | : |
Description
AT4G08230 (E=4e-038) | glycine-rich protein
Coordinates
chrA03:+:12231632..12232450
Molecular Weight (calculated)
11547.9 Da
IEP (calculated)
10.538
GRAVY (calculated)
-0.356
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYVEGGVVK AKRSIWRLRT IKDFFLSIIN LIQVFFITMF SMEKSDSYRK GSGANKKWDG GRPGGGGGGG GGGGGGGGRP GPPRGGLDNV RGLNDIRGAD
101: HNSLPACGSC CG
101: HNSLPACGSC CG
001: MAYVEGGVVK AKRPIWRLRT IKDFFLSIIN LIQVFFVTMF SMEKSDAYRK GSKPNKKWGG GMGGGGGGGG GSGGGGGGRG GGPPRGGLDN VRGLNDIRGA
101: DHNSLPACGS CCG
101: DHNSLPACGS CCG
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q8VY68]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.