Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08230.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT4G08230.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT4G08230.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT4G08230.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT4G08230.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000643.1-P | Field mustard | mitochondrion | 77.78 | 100.0 |
| CDY34007 | Canola | mitochondrion | 77.78 | 100.0 |
| AT4G08230.1 | Thale cress | cytosol | 70.14 | 89.38 |
| KRH18786 | Soybean | mitochondrion | 60.42 | 79.82 |
| KRH16578 | Soybean | mitochondrion | 59.72 | 78.9 |
| PGSC0003DMT400036564 | Potato | mitochondrion | 50.0 | 73.47 |
| Solyc11g013100.1.1 | Tomato | nucleus | 31.94 | 73.02 |
| Os03t0263700-01 | Rice | cytosol | 50.69 | 68.22 |
| TraesCS4A01G089100.1 | Wheat | mitochondrion | 49.31 | 66.36 |
| TraesCS4B01G215200.1 | Wheat | mitochondrion | 49.31 | 66.36 |
| VIT_18s0001g03450.t01 | Wine grape | mitochondrion | 50.0 | 64.86 |
| Zm00001d028531_P001 | Maize | plasma membrane | 49.31 | 64.55 |
| TraesCS4D01G215700.1 | Wheat | mitochondrion | 46.53 | 63.81 |
| EER95136 | Sorghum | mitochondrion | 49.31 | 62.28 |
| GSMUA_Achr6P10030_001 | Banana | nucleus | 29.17 | 60.0 |
| Zm00001d047857_P001 | Maize | cytosol, extracellular, golgi, mitochondrion | 45.14 | 58.56 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, plastid | 45.83 | 56.9 |
| HORVU4Hr1G061190.1 | Barley | mitochondrion | 49.31 | 42.52 |
Protein Annotations
| EnsemblPlants:CDX83140 | EnsemblPlantsGene:GSBRNA2T00138663001 | GO:A0A078D1Z2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Se_SelK/SelG | PANTHER:PTHR16875 | PFAM:PF10961 | ProteinID:CDX83140 | ProteinID:CDX83140.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE95E1 | MapMan:35.2 | : | : | : |
Description
BnaA03g23660D
Coordinates
chrLK031832:-:22637..24581
Molecular Weight (calculated)
15584.9 Da
IEP (calculated)
11.131
GRAVY (calculated)
-0.484
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKWYILYE KSLSHLQVYR LRRRRRSQKI TAMAYVEGGV VKAKRSIWRL RTIKDFFLSI INLIQVFFIT MFSMEKSDSY RKGSGANKKW DGGRPGGGGG
101: GGGGGGGGGG RPGPPRGGLD NVRGLNDIRG ADHNSLPACG SCCG
101: GGGGGGGGGG RPGPPRGGLD NVRGLNDIRG ADHNSLPACG SCCG
001: MAYVEGGVVK AKRPIWRLRT IKDFFLSIIN LIQVFFVTMF SMEKSDAYRK GSKPNKKWGG GMGGGGGGGG GSGGGGGGRG GGPPRGGLDN VRGLNDIRGA
101: DHNSLPACGS CCG
101: DHNSLPACGS CCG
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q8VY68]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.