Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- plastid 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g074170.2.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08230.1 | Solyc06g074170.2.1 | AT5G22290.1 | 21798944 |
| AT4G08230.1 | Solyc11g068750.1.1 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036564 | Potato | mitochondrion | 93.65 | 60.2 |
| GSMUA_Achr6P10030_001 | Banana | nucleus | 66.67 | 60.0 |
| VIT_18s0001g03450.t01 | Wine grape | mitochondrion | 88.89 | 50.45 |
| KRH18786 | Soybean | mitochondrion | 77.78 | 44.95 |
| KRH16578 | Soybean | mitochondrion | 74.6 | 43.12 |
| Bra000643.1-P | Field mustard | mitochondrion | 73.02 | 41.07 |
| CDY34007 | Canola | mitochondrion | 73.02 | 41.07 |
| TraesCS4D01G215700.1 | Wheat | mitochondrion | 66.67 | 40.0 |
| TraesCS4A01G089100.1 | Wheat | mitochondrion | 66.67 | 39.25 |
| TraesCS4B01G215200.1 | Wheat | mitochondrion | 66.67 | 39.25 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, extracellular, plastid | 71.43 | 38.79 |
| Os03t0263700-01 | Rice | cytosol | 63.49 | 37.38 |
| AT4G08230.1 | Thale cress | cytosol | 66.67 | 37.17 |
| Zm00001d028531_P001 | Maize | plasma membrane | 60.32 | 34.55 |
| EER95136 | Sorghum | mitochondrion | 60.32 | 33.33 |
| CDX83140 | Canola | mitochondrion | 73.02 | 31.94 |
| Zm00001d047857_P001 | Maize | cytosol, extracellular, golgi, mitochondrion | 55.56 | 31.53 |
| HORVU4Hr1G061190.1 | Barley | mitochondrion | 66.67 | 25.15 |
Protein Annotations
| EnsemblPlants:Solyc11g013100.1.1 | EnsemblPlantsGene:Solyc11g013100.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006816 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019725 | GO:GO:0032469 | PANTHER:PTHR16875 | SEG:seg |
| UniParc:UPI000276A2A3 | UniProt:K4D6B4 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr11:+:5954870..5955257
Molecular Weight (calculated)
6290.3 Da
IEP (calculated)
8.910
GRAVY (calculated)
-0.903
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MFSMEKTDSY RKGSGSSKKW DGGGPGGPGS GPYGGGPRGP PRGMDNVRGI DHSSLPACGS CCG
001: MAYVEGGVVK AKRPIWRLRT IKDFFLSIIN LIQVFFVTMF SMEKSDAYRK GSKPNKKWGG GMGGGGGGGG GSGGGGGGRG GGPPRGGLDN VRGLNDIRGA
101: DHNSLPACGS CCG
101: DHNSLPACGS CCG
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q8VY68]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.