Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050482 | Potato | nucleus | 85.4 | 89.77 |
| Solyc06g074170.2.1 | Tomato | nucleus | 58.85 | 65.04 |
| VIT_06s0080g00970.t01 | Wine grape | nucleus | 42.26 | 49.23 |
| KRH22653 | Soybean | nucleus | 39.38 | 47.98 |
| Solyc03g078120.2.1 | Tomato | cytosol | 14.38 | 43.33 |
| CDX70995 | Canola | cytosol | 31.64 | 42.81 |
| AT3G44290.1 | Thale cress | cytosol | 31.42 | 42.39 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 31.64 | 42.18 |
| Bra021471.1-P | Field mustard | cytosol, golgi, nucleus | 31.42 | 42.01 |
| CDX88803 | Canola | cytosol | 31.19 | 41.84 |
| AT5G22290.1 | Thale cress | cytosol | 31.42 | 41.76 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 31.19 | 41.72 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 31.64 | 41.69 |
| Bra006619.1-P | Field mustard | cytosol | 30.97 | 41.54 |
| CDY09128 | Canola | cytosol | 31.19 | 41.11 |
| Bra020182.1-P | Field mustard | cytosol | 31.19 | 41.11 |
| Bra002403.1-P | Field mustard | cytosol | 29.42 | 41.05 |
| CDX92368 | Canola | cytosol | 30.09 | 40.6 |
| CDY34716 | Canola | nucleus | 24.78 | 38.1 |
| KRH26664 | Soybean | nucleus | 38.72 | 35.5 |
| Solyc03g098190.2.1 | Tomato | nucleus | 19.03 | 34.54 |
| Solyc08g077110.2.1 | Tomato | nucleus | 19.25 | 25.59 |
| Solyc06g061080.2.1 | Tomato | nucleus | 17.7 | 23.74 |
| Solyc05g055480.2.1 | Tomato | nucleus | 19.25 | 22.54 |
| Solyc11g008010.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 20.35 | 19.78 |
| Solyc02g036430.1.1 | Tomato | nucleus | 23.01 | 18.41 |
| Solyc11g008000.1.1 | Tomato | nucleus | 21.24 | 18.18 |
| Solyc05g055470.2.1 | Tomato | nucleus | 21.68 | 18.01 |
| Solyc06g073050.2.1 | Tomato | nucleus | 23.45 | 17.82 |
| Solyc03g080090.2.1 | Tomato | nucleus | 22.79 | 16.38 |
| Solyc04g072220.2.1 | Tomato | cytosol, nucleus, plastid | 19.91 | 15.03 |
| Solyc12g056790.1.1 | Tomato | nucleus | 18.81 | 14.41 |
| Solyc11g005920.1.1 | Tomato | nucleus | 18.14 | 11.94 |
| Solyc02g081270.2.1 | Tomato | nucleus | 22.57 | 9.91 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:K4DA32 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF40 | SUPFAM:SSF101941 | EnsemblPlantsGene:Solyc11g068750.1 |
| EnsemblPlants:Solyc11g068750.1.1 | TMHMM:TMhelix | UniParc:UPI000276A613 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr11:+:53382092..53387425
Molecular Weight (calculated)
51633.9 Da
IEP (calculated)
9.161
GRAVY (calculated)
-0.537
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHPFKFFKY FFLTRQSDLY KLLKYCYFLG LKKLEKKFVF GVMEDEDLLG CNSEKKNGEI IEKTKISNSN GVEISVATAS TMFPGFRFCP TDEELISYYL
101: KKKVEGSDKC VEVISEVEIW KHEPWDLPGK SIVQSDNEWF FFSPRGRKYP NGSQSKRATE SGYWKATGKE RNVKSGTNII GTKRTLVFHI GRAPKGQRTQ
201: WIMHEYCMTA NPLYQDSMVV CRLRKNNEFH LNDTPGNQRN DLAVTNGTVD LSRAVQLNGL GLINGGECCS KEASSSFSSH SVEQIESGSE SDKLNKELPQ
301: HHSSSHWKDC DEEDCFADIM KDDIIKLDDS SYKAKHNLLP TITRKLESST KSPTSQEAQN LMSNRLPFQG TANRRLKLQT EKVPRGVETL ELHEANKKNI
401: HARGISRRLI NIAPVKRMKQ WSIPLLLISL MLLIVLLCLF GVPQPVKWHY SS
101: KKKVEGSDKC VEVISEVEIW KHEPWDLPGK SIVQSDNEWF FFSPRGRKYP NGSQSKRATE SGYWKATGKE RNVKSGTNII GTKRTLVFHI GRAPKGQRTQ
201: WIMHEYCMTA NPLYQDSMVV CRLRKNNEFH LNDTPGNQRN DLAVTNGTVD LSRAVQLNGL GLINGGECCS KEASSSFSSH SVEQIESGSE SDKLNKELPQ
301: HHSSSHWKDC DEEDCFADIM KDDIIKLDDS SYKAKHNLLP TITRKLESST KSPTSQEAQN LMSNRLPFQG TANRRLKLQT EKVPRGVETL ELHEANKKNI
401: HARGISRRLI NIAPVKRMKQ WSIPLLLISL MLLIVLLCLF GVPQPVKWHY SS
001: MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE NSVAVIAEVE IYKFEPWDLP EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
Arabidopsis Description
NTL8NAC domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.