Factsheet for Solyc09g074910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47770.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT2G47770.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	94.44	92.12
VIT_07s0005g00140.t01	Wine grape	plastid	48.48	51.89
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	48.48	51.89
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	39.9	40.31
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	36.87	40.11
CDY27471	Canola	golgi, peroxisome, plasma membrane	38.38	38.97
CDY55531	Canola	golgi, peroxisome, plasma membrane	38.38	38.78
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	34.85	38.76
Bra021442.1-P	Field mustard	golgi, peroxisome, plasma membrane	37.88	38.27
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	33.84	37.64
Os05t0151200-01	Rice	plastid	31.31	32.12
Zm00001d035803_P001	Maize	plastid	30.3	31.09
Zm00001d010856_P001	Maize	plastid	28.79	30.32
TraesCS1B01G121200.1	Wheat	cytosol	29.29	29.59
TraesCS1A01G093000.1	Wheat	plastid	28.79	29.08
TraesCS1D01G101700.1	Wheat	cytosol, plastid	28.79	29.08
EES17723	Sorghum	plastid	30.3	28.71
HORVU1Hr1G021750.2	Barley	cytosol, plastid	28.28	28.14
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	38.89	16.35

Protein Annotations

Gene3D:1.20.1260.100	MapMan:19.3.4.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0005795	GO:GO:0006778
GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
InterPro:IPR038330	UniProt:K4CV68	PFAM:PF03073	PIRSF:PIRSF005859	PANTHER:PTHR10057	PANTHER:PTHR10057:SF6
EnsemblPlantsGene:Solyc09g074910.1	EnsemblPlants:Solyc09g074910.1.1	TMHMM:TMhelix	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR	UniParc:UPI000276B76F

Description

No Description!

Coordinates

chr9:+:66713344..66713940

Molecular Weight (calculated)

22008.2 Da

IEP (calculated)

10.366

GRAVY (calculated)

0.255

Length

198 amino acids

Sequence
(BLAST)

001: MASQQDELKH RSTTKSQQTE QYTKSAHDKD SKSNKNINRS TRKQIAKRGV KSLTIALSIP LLLTLIDISL FGSSYQYVSM EKPFWFPRLW ALHLACLGSS
101: LLMGLSAWLV WAEGGFHRQP MAIILYLAQL GLSLAWDPVV FKAGATRIGL VLCVALFGVL IGCFRAFKNV NPIAGDLVKP CFGWAVLLSL ANLKLVYH

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [golgi,peroxisome,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.