Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- endoplasmic reticulum 2
- golgi 2
- extracellular 1
- plasma membrane 2
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47770.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT2G47770.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80134 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 98.31 | 98.31 |
| AT2G47770.1 | Thale cress | golgi, peroxisome, vacuole | 76.4 | 69.39 |
| Bra021442.1-P | Field mustard | golgi, peroxisome, plasma membrane | 75.84 | 68.88 |
| VIT_07s0005g00140.t01 | Wine grape | plastid | 46.07 | 44.32 |
| KRH68170 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 38.2 | 36.76 |
| Solyc09g074910.1.1 | Tomato | golgi, peroxisome, plasma membrane | 38.76 | 34.85 |
| PGSC0003DMT400085629 | Potato | golgi, peroxisome, plasma membrane | 37.64 | 33.0 |
| Os05t0151200-01 | Rice | plastid | 31.46 | 29.02 |
| TraesCS1D01G101700.1 | Wheat | cytosol, plastid | 30.9 | 28.06 |
| TraesCS1A01G093000.1 | Wheat | plastid | 30.34 | 27.55 |
| TraesCS1B01G121200.1 | Wheat | cytosol | 30.34 | 27.55 |
| Zm00001d035803_P001 | Maize | plastid | 29.78 | 27.46 |
| HORVU1Hr1G021750.2 | Barley | cytosol, plastid | 30.34 | 27.14 |
| Zm00001d010856_P001 | Maize | plastid | 26.4 | 25.0 |
| EES17723 | Sorghum | plastid | 29.21 | 24.88 |
| GSMUA_Achr8P06680_001 | Banana | golgi, peroxisome, plasma membrane | 34.27 | 12.95 |
Protein Annotations
| EnsemblPlants:Bra004430.1 | EnsemblPlants:Bra004430.1-P | EnsemblPlantsGene:Bra004430 | Gene3D:1.20.1260.100 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR038330 | InterPro:TspO/MBR-related_sf | InterPro:TspO_MBR | PANTHER:PTHR10057 | PANTHER:PTHR10057:SF6 |
| PFAM:PF03073 | PIRSF:PIRSF005859 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002547FCD | UniProt:M4CJP6 |
| MapMan:19.3.4.1 | : | : | : | : | : |
Description
AT2G47770 (E=7e-058) | benzodiazepine receptor-related
Coordinates
chrA05:-:89262..89798
Molecular Weight (calculated)
19144.5 Da
IEP (calculated)
9.736
GRAVY (calculated)
0.325
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSQDIRYRA GDAAMAETER KQADDNNNNK GKRDQKRAMA KRGLKSLTLA VAAPVLLTLF TSYFLGNQAR SSSWVLHLMR LASSGLMGLA AWLVWVDAGF
101: HKKPNALYLY LAQFVLCLTT CMVGSGLAGL AVCLCQSAAL FGCYKAFNEI SPVAGNMVKP CLAFAAFVAA VNVKLAIA
101: HKKPNALYLY LAQFVLCLTT CMVGSGLAGL AVCLCQSAAL FGCYKAFNEI SPVAGNMVKP CLAFAAFVAA VNVKLAIA
001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
Arabidopsis Description
TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [golgi,peroxisome,vacuole]
SUBAcon: [golgi,peroxisome,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.