Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- plasma membrane 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G093000.1 | Wheat | plastid | 67.88 | 66.84 |
| TraesCS1D01G101700.1 | Wheat | cytosol, plastid | 66.84 | 65.82 |
| TraesCS1B01G121200.1 | Wheat | cytosol | 66.84 | 65.82 |
| HORVU1Hr1G021750.2 | Barley | cytosol, plastid | 65.28 | 63.32 |
| Zm00001d010856_P001 | Maize | plastid | 60.62 | 62.23 |
| Zm00001d035803_P001 | Maize | plastid | 60.62 | 60.62 |
| EES17723 | Sorghum | plastid | 61.14 | 56.46 |
| VIT_07s0005g00140.t01 | Wine grape | plastid | 33.68 | 35.14 |
| CDY53019 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 31.09 | 32.97 |
| Bra004430.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 29.02 | 31.46 |
| Solyc09g074910.1.1 | Tomato | golgi, peroxisome, plasma membrane | 32.12 | 31.31 |
| CDX80134 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 28.5 | 30.9 |
| KRH68170 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 29.53 | 30.81 |
| PGSC0003DMT400085629 | Potato | golgi, peroxisome, plasma membrane | 32.12 | 30.54 |
| CDY55531 | Canola | golgi, peroxisome, plasma membrane | 30.57 | 30.1 |
| Bra021442.1-P | Field mustard | golgi, peroxisome, plasma membrane | 30.57 | 30.1 |
| KRH37113 | Soybean | plasma membrane | 25.91 | 29.94 |
| AT2G47770.1 | Thale cress | golgi, peroxisome, vacuole | 30.05 | 29.59 |
| CDY27471 | Canola | golgi, peroxisome, plasma membrane | 29.53 | 29.23 |
| VIT_05s0020g01510.t01 | Wine grape | plasma membrane | 25.39 | 29.17 |
| KRH12050 | Soybean | plasma membrane | 24.35 | 28.14 |
| GSMUA_Achr8P06680_001 | Banana | golgi, peroxisome, plasma membrane | 34.72 | 14.23 |
Protein Annotations
| Gene3D:1.20.1260.100 | MapMan:19.3.4.1 | EntrezGene:9271175 | EMBL:AK240936 | UniProt:B7F8G3 | ProteinID:BAH92948.1 |
| ProteinID:BAS92315.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005794 | GO:GO:0005795 | GO:GO:0006778 | GO:GO:0006950 |
| GO:GO:0006970 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0020037 | InterPro:IPR038330 |
| EnsemblPlantsGene:Os05g0151200 | EnsemblPlants:Os05t0151200-01 | PFAM:PF03073 | PANTHER:PTHR10057 | PANTHER:PTHR10057:SF0 | TMHMM:TMhelix |
| InterPro:TspO/MBR-related_sf | InterPro:TspO_MBR | UniParc:UPI000188AFB9 | RefSeq:XP_015639220.1 | SEG:seg | : |
Description
TspO/MBR-related protein family protein. (Os05t0151200-01)
Coordinates
chr5:+:2969525..2970353
Molecular Weight (calculated)
18542.5 Da
IEP (calculated)
10.549
GRAVY (calculated)
0.622
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAAAAAAA AQEGITHRAV RGDGGDAAAT AGGGEAASRD PRKAGRAKRG LRSLAAAVSV SVALMAASFY GSGSASASAS AARVTVARAG SVAAEAVMAL
101: AAWMVWAEGG LHRRPGATLA PFVAQLVAAL AWAPLALGLA APAAGLACCA AMAAGAAACA RGFGGVNPVA GDLAKPCVAW AVLLAVINYK MMN
101: AAWMVWAEGG LHRRPGATLA PFVAQLVAAL AWAPLALGLA APAAGLACCA AMAAGAAACA RGFGGVNPVA GDLAKPCVAW AVLLAVINYK MMN
001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
Arabidopsis Description
TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.