Factsheet for VIT_07s0005g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47770.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68170	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	51.89	51.89
Solyc09g074910.1.1	Tomato	golgi, peroxisome, plasma membrane	51.89	48.48
CDY53019	Canola	endoplasmic reticulum, nucleus, plasma membrane	47.03	47.8
PGSC0003DMT400085629	Potato	golgi, peroxisome, plasma membrane	51.89	47.29
AT2G47770.1	Thale cress	golgi, peroxisome, vacuole	49.73	46.94
Bra004430.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	44.32	46.07
VIT_05s0020g01510.t01	Wine grape	plasma membrane	41.62	45.83
CDY27471	Canola	golgi, peroxisome, plasma membrane	48.11	45.64
CDY55531	Canola	golgi, peroxisome, plasma membrane	48.11	45.41
CDX80134	Canola	endoplasmic reticulum, peroxisome, plasma membrane	43.24	44.94
Bra021442.1-P	Field mustard	golgi, peroxisome, plasma membrane	47.57	44.9
Zm00001d010856_P001	Maize	plastid	35.68	35.11
Os05t0151200-01	Rice	plastid	35.14	33.68
Zm00001d035803_P001	Maize	plastid	34.59	33.16
TraesCS1A01G093000.1	Wheat	plastid	34.59	32.65
TraesCS1D01G101700.1	Wheat	cytosol, plastid	34.05	32.14
TraesCS1B01G121200.1	Wheat	cytosol	33.51	31.63
EES17723	Sorghum	plastid	35.68	31.58
HORVU1Hr1G021750.2	Barley	cytosol, plastid	33.51	31.16
GSMUA_Achr8P06680_001	Banana	golgi, peroxisome, plasma membrane	47.03	18.47

Protein Annotations

Gene3D:1.20.1260.100	EntrezGene:100267613	wikigene:100267613	MapMan:19.3.4.1	ProteinID:CCB59947	ProteinID:CCB59947.1
UniProt:F6HZ32	EMBL:FN596502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0005795	GO:GO:0006778
GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037
InterPro:IPR038330	EntrezGene:LOC100267613	wikigene:LOC100267613	PFAM:PF03073	PIRSF:PIRSF005859	PANTHER:PTHR10057
PANTHER:PTHR10057:SF6	TMHMM:TMhelix	InterPro:TspO/MBR-related_sf	InterPro:TspO_MBR	UniParc:UPI00015CAA3D	ArrayExpress:VIT_07s0005g00140
EnsemblPlantsGene:VIT_07s0005g00140	EnsemblPlants:VIT_07s0005g00140.t01	unigene:Vvi.10169	RefSeq:XP_002263702	RefSeq:XP_002263702.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:2930006..2930952

Molecular Weight (calculated)

20148.2 Da

IEP (calculated)

10.924

GRAVY (calculated)

0.388

Length

185 amino acids

Sequence
(BLAST)

001: MASTNLKQRI KDGPSTPFPT NNTTKREKKM AMAKRGLRSL TTAVSIPLSL TLVTIYFSGA TDRYRTLPKP FWFPPLWAVH ATSMASSLLM GLSAWLVWAE
101: GGFHKKPTAL PLFVAQLALS LIRDPIVFGY GGTRVGLVVC MGLFGALVGC ARMFREVNPI AGDLVKPCLA WTAYVGVVTL KLLFA

Best Arabidopsis Sequence Match ( AT2G47770.1 )
(BLAST)

001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA

Arabidopsis Description

TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.