Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- mitochondrion 1
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37113 | Soybean | plasma membrane | 51.79 | 52.1 |
| KRH12050 | Soybean | plasma membrane | 49.4 | 49.7 |
| VIT_07s0005g00140.t01 | Wine grape | plastid | 45.83 | 41.62 |
| Zm00001d035803_P001 | Maize | plastid | 32.14 | 27.98 |
| Zm00001d010856_P001 | Maize | plastid | 29.17 | 26.06 |
| TraesCS1D01G101700.1 | Wheat | cytosol, plastid | 29.76 | 25.51 |
| Os05t0151200-01 | Rice | plastid | 29.17 | 25.39 |
| TraesCS1A01G093000.1 | Wheat | plastid | 29.17 | 25.0 |
| TraesCS1B01G121200.1 | Wheat | cytosol | 29.17 | 25.0 |
| HORVU1Hr1G021750.2 | Barley | cytosol, plastid | 26.79 | 22.61 |
| EES17723 | Sorghum | plastid | 27.98 | 22.49 |
| GSMUA_Achr8P06680_001 | Banana | golgi, peroxisome, plasma membrane | 42.26 | 15.07 |
Protein Annotations
| Gene3D:1.20.1260.100 | EntrezGene:100259718 | wikigene:100259718 | MapMan:19.3.4.1 | ProteinID:CCB50325 | ProteinID:CCB50325.1 |
| UniProt:F6HDF5 | EMBL:FN595749 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR038330 |
| EntrezGene:LOC100259718 | wikigene:LOC100259718 | PFAM:PF03073 | PIRSF:PIRSF005859 | PANTHER:PTHR10057 | PANTHER:PTHR10057:SF6 |
| TMHMM:TMhelix | InterPro:TspO/MBR-related_sf | InterPro:TspO_MBR | UniParc:UPI000198325F | ArrayExpress:VIT_05s0020g01510 | EnsemblPlantsGene:VIT_05s0020g01510 |
| EnsemblPlants:VIT_05s0020g01510.t01 | RefSeq:XP_002276187 | RefSeq:XP_002276187.1 | : | : | : |
Description
No Description!
Coordinates
chr5:+:3188989..3189497
Molecular Weight (calculated)
18352.0 Da
IEP (calculated)
8.233
GRAVY (calculated)
0.793
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MELKHGPEDQ APTHQHKISL PKLAVAVGVP VCLTMAIIFL FGSSHKYRAI AKPFWFPPLW VMHVGSLVCS GLMGVSAWAV WSEGGFRGES DALPLYVAHI
101: SLGIVWEPLV VVMGAAWMGL GFCVVHFGTL VACYSAFRNV NPVVGELVKP CLAWVAILTF LTFKLIYL
101: SLGIVWEPLV VVMGAAWMGL GFCVVHFGTL VACYSAFRNV NPVVGELVKP CLAWVAILTF LTFKLIYL
001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
Arabidopsis Description
TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [golgi,peroxisome,vacuole]
SUBAcon: [golgi,peroxisome,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.