Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- golgi 1
- plasma membrane 2
- plastid 2
- peroxisome 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47770.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0005g00140.t01 | Wine grape | plastid | 18.47 | 47.03 |
| KRH68170 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 17.62 | 44.86 |
| VIT_05s0020g01510.t01 | Wine grape | plasma membrane | 15.07 | 42.26 |
| KRH12050 | Soybean | plasma membrane | 14.01 | 39.52 |
| KRH37113 | Soybean | plasma membrane | 14.01 | 39.52 |
| PGSC0003DMT400085629 | Potato | golgi, peroxisome, plasma membrane | 16.99 | 39.41 |
| Solyc09g074910.1.1 | Tomato | golgi, peroxisome, plasma membrane | 16.35 | 38.89 |
| CDY53019 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 14.44 | 37.36 |
| AT2G47770.1 | Thale cress | golgi, peroxisome, vacuole | 15.29 | 36.73 |
| CDY27471 | Canola | golgi, peroxisome, plasma membrane | 15.07 | 36.41 |
| Zm00001d035803_P001 | Maize | plastid | 14.44 | 35.23 |
| CDY55531 | Canola | golgi, peroxisome, plasma membrane | 14.65 | 35.2 |
| Zm00001d010856_P001 | Maize | plastid | 14.01 | 35.11 |
| Os05t0151200-01 | Rice | plastid | 14.23 | 34.72 |
| Bra021442.1-P | Field mustard | golgi, peroxisome, plasma membrane | 14.44 | 34.69 |
| Bra004430.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 12.95 | 34.27 |
| CDX80134 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 12.74 | 33.71 |
| TraesCS1B01G121200.1 | Wheat | cytosol | 14.01 | 33.67 |
| TraesCS1D01G101700.1 | Wheat | cytosol, plastid | 14.01 | 33.67 |
| TraesCS1A01G093000.1 | Wheat | plastid | 13.8 | 33.16 |
| EES17723 | Sorghum | plastid | 14.23 | 32.06 |
| HORVU1Hr1G021750.2 | Barley | cytosol, plastid | 12.95 | 30.65 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P06680_001 | EnsemblPlants:GSMUA_Achr8T06680_001 | EnsemblPlantsGene:GSMUA_Achr8G06680_001 | Gene3D:1.20.1260.100 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR038330 | InterPro:TspO/MBR-related_sf | InterPro:TspO_MBR | PANTHER:PTHR34962 | PANTHER:PTHR34962:SF2 |
| PFAM:PF03073 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00029689BF | UniProt:M0TN71 | MapMan:19.3.4.1 |
Description
peripheral-type benzodiazepine receptor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G06680_001]
Coordinates
chr8:-:4337208..4341408
Molecular Weight (calculated)
52096.2 Da
IEP (calculated)
7.119
GRAVY (calculated)
-0.049
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQTLKHRP KEEPTTTATT TATPSTTSHK YRKDQRLAMA KRGLRSLAVA VAIPAVGTAA SISIAGATLA STKPSWSPPV WAFHLGSLLM SALLGFSSWL
101: VWAEGGFHGR SEALPLYLSE LFMSLMWAPL VFGAGFPRPG MAVCVAHFAV LFMLSQSYRQ VNPMAADLIK PYLAWVSFLA VFNYKLLNSK AIVVIYVYIM
201: VIHVFILGGI EQIAEEAAHR PDPEDLRAHA SELTQRSPDI ENYATSSSRG TVRRVSSGDH LRVSKFQKSK NYVEDTEDMS FSGGTNSSSD IDEVFPKTQI
301: WESSTEVTRT CSSETGKVND DSRYNFPIES VESKSFVNKV KNSHLDVMNE PWWLKLPYVF AIFLRRGSDG NGPKGLYSLD ISSSSVEEKA PSYTIAFQDR
401: GDATNFCYIV KTFFEDLGDV SADIVPLTIK ELDQVVKSFD LKVIVVRKGQ IHLYAGQPLV EVEAVIRSFL D
101: VWAEGGFHGR SEALPLYLSE LFMSLMWAPL VFGAGFPRPG MAVCVAHFAV LFMLSQSYRQ VNPMAADLIK PYLAWVSFLA VFNYKLLNSK AIVVIYVYIM
201: VIHVFILGGI EQIAEEAAHR PDPEDLRAHA SELTQRSPDI ENYATSSSRG TVRRVSSGDH LRVSKFQKSK NYVEDTEDMS FSGGTNSSSD IDEVFPKTQI
301: WESSTEVTRT CSSETGKVND DSRYNFPIES VESKSFVNKV KNSHLDVMNE PWWLKLPYVF AIFLRRGSDG NGPKGLYSLD ISSSSVEEKA PSYTIAFQDR
401: GDATNFCYIV KTFFEDLGDV SADIVPLTIK ELDQVVKSFD LKVIVVRKGQ IHLYAGQPLV EVEAVIRSFL D
001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
Arabidopsis Description
TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.