Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47770.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT2G47770.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT2G47770.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT2G47770.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021442.1-P | Field mustard | golgi, peroxisome, plasma membrane | 98.98 | 98.98 |
| CDY27471 | Canola | golgi, peroxisome, plasma membrane | 95.41 | 95.9 |
| AT2G47770.1 | Thale cress | golgi, peroxisome, vacuole | 82.14 | 82.14 |
| CDY53019 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 73.98 | 79.67 |
| CDX80134 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 68.37 | 75.28 |
| VIT_07s0005g00140.t01 | Wine grape | plastid | 45.41 | 48.11 |
| KRH68170 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 39.29 | 41.62 |
| Solyc09g074910.1.1 | Tomato | golgi, peroxisome, plasma membrane | 38.78 | 38.38 |
| PGSC0003DMT400085629 | Potato | golgi, peroxisome, plasma membrane | 37.24 | 35.96 |
| Os05t0151200-01 | Rice | plastid | 30.1 | 30.57 |
| TraesCS1A01G093000.1 | Wheat | plastid | 29.08 | 29.08 |
| TraesCS1B01G121200.1 | Wheat | cytosol | 29.08 | 29.08 |
| TraesCS1D01G101700.1 | Wheat | cytosol, plastid | 28.57 | 28.57 |
| HORVU1Hr1G021750.2 | Barley | cytosol, plastid | 28.57 | 28.14 |
| EES17723 | Sorghum | plastid | 28.57 | 26.79 |
| Zm00001d035803_P001 | Maize | plastid | 26.02 | 26.42 |
| Zm00001d010856_P001 | Maize | plastid | 24.49 | 25.53 |
| GSMUA_Achr8P06680_001 | Banana | golgi, peroxisome, plasma membrane | 35.2 | 14.65 |
Protein Annotations
| EnsemblPlants:CDY55531 | EnsemblPlantsGene:GSBRNA2T00017005001 | Gene3D:1.20.1260.100 | GO:A0A078J178 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR038330 | InterPro:TspO/MBR-related_sf | InterPro:TspO_MBR | PANTHER:PTHR10057 | PANTHER:PTHR10057:SF6 |
| PFAM:PF03073 | PIRSF:PIRSF005859 | ProteinID:CDY55531 | ProteinID:CDY55531.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EDC767 | UniProt:A0A078J178 | MapMan:19.3.4.1 | : | : | : |
Description
BnaA04g29550DBnaA04g29550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J178]
Coordinates
chrLK033411:-:43301..43945
Molecular Weight (calculated)
20975.5 Da
IEP (calculated)
9.729
GRAVY (calculated)
0.203
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSQDIRHRG GDDRDAATTA MAETDRKQAD DNNKGQRDQK RAMAKRGLKS LTVAVAAPVL VMLFETYFLG GGGYGSRARS SSWIPPPWVL HATRLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFTL CLLWGPVTFL VGSGLAGLVV WLGQSAALFG CYKAFNEISP VAGNLVKPCL ACAAFVTAVN VKLAIA
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFTL CLLWGPVTFL VGSGLAGLVV WLGQSAALFG CYKAFNEISP VAGNLVKPCL ACAAFVTAVN VKLAIA
001: MDSQDIRYRG GDDRDAATTA MAETERKSAD DNKGKRDQKR AMAKRGLKSL TVAVAAPVLV TLFATYFLGT SDGYGNRAKS SSWIPPLWLL HTTCLASSGL
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
101: MGLAAWLVWV DGGFHKKPNA LYLYLAQFLL CLVWDPVTFR VGSGVAGLAV WLGQSAALFG CYKAFNEISP VAGNLVKPCL AWAAFVAAVN VKLAVA
Arabidopsis Description
TSPOTSPO [Source:UniProtKB/TrEMBL;Acc:A0A178W1Q1]
SUBAcon: [peroxisome,golgi,vacuole]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.