Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78905 | Canola | cytosol, peroxisome, plasma membrane | 96.63 | 96.63 |
| CDX98596 | Canola | cytosol, peroxisome, plasma membrane | 91.92 | 91.61 |
| CDY01565 | Canola | cytosol, peroxisome, plasma membrane | 91.58 | 91.28 |
| AT4G18910.1 | Thale cress | golgi, peroxisome, vacuole | 88.55 | 89.46 |
| AT4G19030.1 | Thale cress | plasma membrane | 79.46 | 79.73 |
| VIT_10s0003g01830.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 67.34 | 70.92 |
| KRH42926 | Soybean | plasma membrane | 65.32 | 70.8 |
| KRH11076 | Soybean | cytosol | 64.98 | 70.7 |
| KRH59036 | Soybean | plasma membrane | 63.97 | 70.37 |
| KRH21197 | Soybean | cytosol, peroxisome, plasma membrane | 64.65 | 70.33 |
| KRH59035 | Soybean | plasma membrane | 62.96 | 69.0 |
| PGSC0003DMT400071510 | Potato | plasma membrane | 62.29 | 66.79 |
| Solyc03g005980.2.1 | Tomato | plasma membrane | 61.95 | 66.43 |
| KRH42923 | Soybean | extracellular | 60.27 | 66.05 |
| PGSC0003DMT400073246 | Potato | plasma membrane | 62.63 | 64.14 |
| Solyc02g071920.2.1 | Tomato | plasma membrane | 62.63 | 64.14 |
| CDY71538 | Canola | extracellular, plasma membrane, vacuole | 44.78 | 58.33 |
| KRH45251 | Soybean | extracellular | 17.51 | 57.14 |
| CDX99689 | Canola | extracellular | 31.65 | 55.62 |
| CDX99688 | Canola | plasma membrane | 50.51 | 53.0 |
| CDX84320 | Canola | extracellular, plasma membrane, plastid, vacuole | 50.51 | 52.45 |
| CDY17241 | Canola | cytosol, plasma membrane, plastid, vacuole | 50.51 | 52.45 |
| CDY17243 | Canola | extracellular, plasma membrane, plastid, vacuole | 50.51 | 52.45 |
| CDY65403 | Canola | plasma membrane | 49.83 | 52.3 |
| CDX84321 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 50.17 | 52.1 |
| CDY72002 | Canola | plastid | 14.81 | 51.76 |
| CDY01700 | Canola | plasma membrane | 48.48 | 50.88 |
| CDX74558 | Canola | plasma membrane | 48.48 | 50.88 |
| CDY16269 | Canola | plastid | 11.45 | 47.22 |
| CDY51581 | Canola | plastid | 11.45 | 47.22 |
| CDY35532 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.1 | 45.55 |
| CDY41749 | Canola | plasma membrane | 45.12 | 45.27 |
| CDX84114 | Canola | plasma membrane | 46.13 | 41.02 |
| CDY69767 | Canola | plasma membrane | 35.02 | 38.95 |
| CDY39946 | Canola | cytosol, peroxisome, plasma membrane | 39.39 | 38.36 |
| CDX87340 | Canola | cytosol, peroxisome, plasma membrane | 39.39 | 38.36 |
| CDY66949 | Canola | cytosol, peroxisome, plasma membrane | 38.72 | 37.7 |
| CDY53224 | Canola | cytosol, peroxisome, plasma membrane | 38.72 | 37.7 |
| CDY35531 | Canola | vacuole | 39.39 | 37.38 |
| CDY25253 | Canola | plasma membrane | 37.71 | 37.21 |
| CDX94261 | Canola | plasma membrane | 37.71 | 37.21 |
| CDX67591 | Canola | plasma membrane | 37.71 | 37.21 |
| CDY29921 | Canola | vacuole | 39.39 | 37.14 |
| CDY05100 | Canola | plasma membrane | 37.37 | 36.88 |
| CDX90757 | Canola | plasma membrane | 37.37 | 36.88 |
| CDY29922 | Canola | peroxisome, plasma membrane, vacuole | 40.4 | 36.59 |
| CDY35528 | Canola | cytosol | 16.16 | 35.56 |
| HORVU7Hr1G088900.1 | Barley | cytosol, golgi, plasma membrane | 24.24 | 34.12 |
| CDY27709 | Canola | plasma membrane | 28.62 | 31.25 |
| CDY05231 | Canola | plasma membrane | 28.62 | 31.25 |
| GSMUA_Achr4P10230_001 | Banana | plastid | 19.19 | 18.15 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | GO:A0A078EE50 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | EnsemblPlants:CDX99411 |
| ProteinID:CDX99411 | ProteinID:CDX99411.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00107737001 | InterPro:IPR023271 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF189 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0004EB39F4 | : |
Description
BnaC01g11410D
Coordinates
chrLK031910:-:525269..527570
Molecular Weight (calculated)
31673.6 Da
IEP (calculated)
8.599
GRAVY (calculated)
0.415
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEISGNGHG NAREGAVVVN INEEHERQQH KEAIHISKPI KKQDSLLSIS VPFLQKLMAE ILGTYFLIFA GCASVAVNAQ HDKTVTHPGI AIVWGLTVMV
101: LVYSLGHISG AHFNPALTVA FASCGRFPLK QVPAYVISQV IGSTLAAATL RLLFGLDQDV CSGKHDVFVG TLPAGSDLQS FVIEFIITFY LMFIISGVAT
201: DNRAIGELAG LAVGSTVLLN VIIAGPVSGA SMNPGRSLGP AMVYNCYRGI WIYIASPILG AVAGAWVYNT VRYTDKPLRE ITKSGSFLKA LQNSSSR
101: LVYSLGHISG AHFNPALTVA FASCGRFPLK QVPAYVISQV IGSTLAAATL RLLFGLDQDV CSGKHDVFVG TLPAGSDLQS FVIEFIITFY LMFIISGVAT
201: DNRAIGELAG LAVGSTVLLN VIIAGPVSGA SMNPGRSLGP AMVYNCYRGI WIYIASPILG AVAGAWVYNT VRYTDKPLRE ITKSGSFLKA LQNSSSR
001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
Arabidopsis Description
NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.