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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67837
CDX71796
CDX89063
CDX97739
CDY30157
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G28050.1 CDX97739 AT3G16310.1 21798944
AT3G28050.1 CDY30157 AT3G16310.1 21798944
AT3G28050.1 CDX67837 AT3G60600.1 21798944
AT3G28050.1 CDX71796 AT3G60600.1 21798944
AT3G28050.1 CDX89063 AT3G60600.1 21798944
AT3G28050.1 CDY41153 AT3G60600.1 21798944
AT3G28050.1 CDY48365 AT3G60600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra039062.1-P Field mustard extracellular, plasma membrane, vacuole 95.94 100.0
CDY00140 Canola golgi, plasma membrane, vacuole 98.92 98.92
CDY04005 Canola plasma membrane 91.6 92.1
CDY69634 Canola extracellular 21.14 90.7
AT3G28050.1 Thale cress plasma membrane 89.97 90.46
Solyc02g087060.2.1 Tomato golgi, plasma membrane, vacuole 61.25 62.09
VIT_14s0066g01650.t01 Wine grape golgi, plasma membrane, vacuole 57.45 58.89
KRG88846 Soybean plasma membrane 57.45 57.14
KRH75315 Soybean plasma membrane 56.37 56.68
CDY44584 Canola golgi, plasma membrane, plastid 17.89 52.8
CDY49754 Canola plasma membrane 47.43 51.32
CDX85184 Canola plasma membrane 49.86 50.69
CDY13131 Canola plasma membrane, vacuole 22.76 47.46
CDY53118 Canola plasma membrane 42.82 47.02
CDX85185 Canola golgi, plasma membrane, vacuole 45.53 46.93
CDX86450 Canola plasma membrane 47.43 46.67
CDX95070 Canola plasma membrane 29.27 46.55
CDX72470 Canola plasma membrane 29.27 46.55
CDY59916 Canola cytosol, plasma membrane, plastid 13.28 45.37
CDX99641 Canola plasma membrane 42.55 44.99
CDY15933 Canola plasma membrane 42.55 44.86
CDY15932 Canola golgi, nucleus, plasma membrane 43.9 44.63
CDY44581 Canola plasma membrane 40.38 44.61
CDX99640 Canola golgi, plasma membrane, vacuole 41.46 44.48
CDY11676 Canola golgi, plasma membrane, vacuole 43.63 43.99
CDY11677 Canola golgi, nucleus, plasma membrane 44.17 43.82
CDY11678 Canola plasma membrane 43.09 43.68
CDY66864 Canola golgi, plasma membrane, vacuole 41.46 43.59
CDX67449 Canola golgi, plasma membrane, vacuole 42.82 43.29
CDY15931 Canola extracellular, mitochondrion, plasma membrane, vacuole 11.11 43.16
CDY11675 Canola golgi, nucleus, plasma membrane 33.33 43.01
CDY36827 Canola golgi, plasma membrane, plastid 42.55 42.43
CDX99639 Canola plasma membrane 23.04 42.29
CDY59918 Canola extracellular 14.91 41.98
CDY38468 Canola extracellular 13.28 41.53
CDX86451 Canola cytosol 49.32 40.9
CDY04006 Canola cytosol, peroxisome, plasma membrane 33.88 35.41
CDX67447 Canola plasma membrane 43.09 33.76
CDY03759 Canola plasma membrane 32.79 32.27
CDY42998 Canola golgi, plasma membrane 32.79 32.27
CDY23506 Canola plasma membrane 32.25 31.9
CDX68349 Canola plasma membrane 31.71 31.37
CDY38802 Canola golgi, plasma membrane, vacuole 31.17 30.67
CDY61698 Canola plasma membrane 29.81 29.49
CDY36829 Canola plasma membrane 28.46 28.93
CDY65646 Canola extracellular, plasma membrane 21.95 26.47
CDY11606 Canola plasma membrane 30.89 24.26
CDX67448 Canola plasma membrane 44.44 22.22
Protein Annotations
MapMan:24.2.1.5GO:A0A078G3W8UniProt:A0A078G3W8EnsemblPlants:CDY20031ProteinID:CDY20031ProteinID:CDY20031.1
InterPro:EamA_domGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00009866001PFAM:PF00892
PANTHER:PTHR31218PANTHER:PTHR31218:SF64SUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI0004EEDD61InterPro:WAT1-related
Description
BnaA09g02200DWAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3W8]
Coordinates
chrLK032102:-:518495..521275
Molecular Weight (calculated)
40364.6 Da
IEP (calculated)
7.822
GRAVY (calculated)
0.569
Length
369 amino acids
Sequence
(BLAST)
001: MAGKYFQREV LPVMALVIME CANVGLNTLF KAATLQGMSF HVFIVYSYGL AALLLLPSIF FSSRSRTLPP MNFSILYKIV VLGLIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA ILFRLMESVS FKRISSVAKM LGTVVSIGGA FIVTLYNGPL VISMSPPSVS LRSQSTNHNW IIGAAFLSVE YFMVPLWYIV
201: QTQIMREYPS EFTVVCYYSL GVSFWTGLVT LFTEGSDLNA WKIKPNIALV SIVCSGVFGS CINNTIHTWA LRIKGPLFVA MFKPLSIAIA VAMGVIFLHD
301: SLYIGSLIGA TVITTGFYTV MWGKAKEAAM VEDDNKANNE DATNEADHDS PLASQKAPLL ESYKNDEHV
Best Arabidopsis Sequence Match ( AT3G28050.1 )
(BLAST)
001: MARKYFQREV LPVTALVIME CANVGLNTLF KAATLKGMSF HVFIVYSYGL AALLLLPSLF CSFRSRTLPP MNFSILYKIV LLGIIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA VVFRMESVSF KRTSSVAKML GTVVSIGGAF IVTLYNGPVV IAKSPPSVSL RSQSTNPNWI LGAGFLAVEY FCVPLWYIVQ
201: TQIMREYPAE FTVVCFYSIG VSFWTALVTL FTEGNDLGAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEVALV EDDNKANHEE ANEADLDSPS GSQKAPLLES YKNDEHV
Arabidopsis Description
WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VL75]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.