Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 3
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g03770.t01 | |
| VIT_15s0048g00220.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G28050.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT3G28050.1 | VIT_15s0048g00220.t01 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g087060.2.1 | Tomato | golgi, plasma membrane, vacuole | 64.44 | 63.74 |
| Bra033035.1-P | Field mustard | plasma membrane | 59.17 | 58.04 |
| CDY00140 | Canola | golgi, plasma membrane, vacuole | 59.17 | 57.72 |
| CDY04005 | Canola | plasma membrane | 58.61 | 57.49 |
| AT3G28050.1 | Thale cress | plasma membrane | 58.61 | 57.49 |
| CDY20031 | Canola | plasma membrane | 58.89 | 57.45 |
| Bra039062.1-P | Field mustard | extracellular, plasma membrane, vacuole | 56.39 | 57.34 |
| KRH18613 | Soybean | plasma membrane | 56.94 | 54.96 |
| CDY69634 | Canola | extracellular | 13.06 | 54.65 |
| KRG93364 | Soybean | plasma membrane | 56.39 | 54.42 |
| VIT_14s0066g01640.t01 | Wine grape | plasma membrane | 52.5 | 52.65 |
| KRG93361 | Soybean | plasma membrane | 52.78 | 51.91 |
| KRH13199 | Soybean | endoplasmic reticulum, extracellular, plastid | 17.22 | 51.24 |
| KRG93356 | Soybean | plasma membrane | 43.89 | 48.02 |
| VIT_17s0000g07910.t01 | Wine grape | golgi, plasma membrane | 42.5 | 47.08 |
| VIT_01s0026g00500.t01 | Wine grape | extracellular, golgi, vacuole | 19.72 | 47.02 |
| VIT_01s0026g00360.t01 | Wine grape | golgi, plasma membrane | 40.83 | 46.37 |
| VIT_01s0026g00530.t01 | Wine grape | golgi, plasma membrane | 42.78 | 44.51 |
| VIT_01s0026g00540.t01 | Wine grape | golgi, plasma membrane | 43.33 | 43.82 |
| VIT_01s0026g00520.t01 | Wine grape | golgi, mitochondrion, plasma membrane, vacuole | 28.33 | 43.22 |
| VIT_01s0026g00490.t01 | Wine grape | golgi, plasma membrane, vacuole | 27.22 | 42.24 |
| VIT_01s0026g00550.t01 | Wine grape | golgi, plasma membrane | 29.44 | 41.9 |
| VIT_17s0000g07930.t01 | Wine grape | plasma membrane | 37.5 | 39.94 |
Protein Annotations
| EntrezGene:100259498 | wikigene:100259498 | MapMan:24.2.1.5 | ProteinID:CCB58536 | ProteinID:CCB58536.1 | InterPro:EamA_dom |
| UniProt:F6HV18 | EMBL:FN596252 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 |
| GO:GO:0055085 | EntrezGene:LOC100259498 | wikigene:LOC100259498 | PFAM:PF00892 | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF64 |
| SUPFAM:SSF103481 | TIGR:TC67520 | TMHMM:TMhelix | UniParc:UPI00015C947D | ArrayExpress:VIT_14s0066g01650 | EnsemblPlantsGene:VIT_14s0066g01650 |
| EnsemblPlants:VIT_14s0066g01650.t01 | unigene:Vvi.6623 | InterPro:WAT1-related | RefSeq:XP_002279762 | RefSeq:XP_002279762.1 | SEG:seg |
Description
WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:F6HV18]
Coordinates
chr14:+:27995719..27998264
Molecular Weight (calculated)
39194.6 Da
IEP (calculated)
9.215
GRAVY (calculated)
0.662
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRGDWYRDV VSFSAMVALE CTNVGLNTLY KAATLRGLNY HVFVVYAYGI AALVLLPSPF ITHRRGVLPP LSFPVLCKIF VLGLIGCASQ TMGYRGINIS
101: SPTLASAISN LVPAFTFILA VIFRMEKLAL RSSSSQAKII GTIVSISGAF VVTLYKGPPI ILTPSPSISL HQPPHPLRSS ESSWIIGALF LSVEYFLTPV
201: WYIVQAHIIK EYPSEPTVVF FYNLFVSLLA AIVGLVTEPN SSVWIVRPRI ALASIVCSGI FGSFLGNTIH TWAIRMKGPV YVAMFKPLAI IIAVTMGVAL
301: LGDSLYLGSV IGATIITMGF YTVMWGKAQE DMVEDCTIGS LESPSAQKAP LLQNYKTEEI
101: SPTLASAISN LVPAFTFILA VIFRMEKLAL RSSSSQAKII GTIVSISGAF VVTLYKGPPI ILTPSPSISL HQPPHPLRSS ESSWIIGALF LSVEYFLTPV
201: WYIVQAHIIK EYPSEPTVVF FYNLFVSLLA AIVGLVTEPN SSVWIVRPRI ALASIVCSGI FGSFLGNTIH TWAIRMKGPV YVAMFKPLAI IIAVTMGVAL
301: LGDSLYLGSV IGATIITMGF YTVMWGKAQE DMVEDCTIGS LESPSAQKAP LLQNYKTEEI
001: MARKYFQREV LPVTALVIME CANVGLNTLF KAATLKGMSF HVFIVYSYGL AALLLLPSLF CSFRSRTLPP MNFSILYKIV LLGIIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA VVFRMESVSF KRTSSVAKML GTVVSIGGAF IVTLYNGPVV IAKSPPSVSL RSQSTNPNWI LGAGFLAVEY FCVPLWYIVQ
201: TQIMREYPAE FTVVCFYSIG VSFWTALVTL FTEGNDLGAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEVALV EDDNKANHEE ANEADLDSPS GSQKAPLLES YKNDEHV
101: SPTLASAISN LTPAFTFLLA VVFRMESVSF KRTSSVAKML GTVVSIGGAF IVTLYNGPVV IAKSPPSVSL RSQSTNPNWI LGAGFLAVEY FCVPLWYIVQ
201: TQIMREYPAE FTVVCFYSIG VSFWTALVTL FTEGNDLGAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEVALV EDDNKANHEE ANEADLDSPS GSQKAPLLES YKNDEHV
Arabidopsis Description
WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VL75]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.