Factsheet for VIT_01s0026g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53403	Soybean	plasma membrane	61.8	62.86
PGSC0003DMT400010543	Potato	plasma membrane, plastid	55.9	57.02
VIT_01s0026g00530.t01	Wine grape	golgi, plasma membrane	54.78	56.36
Solyc05g005860.1.1	Tomato	plasma membrane	55.9	53.49
VIT_01s0026g00360.t01	Wine grape	golgi, plasma membrane	46.63	52.37
VIT_01s0026g00490.t01	Wine grape	golgi, plasma membrane, vacuole	31.74	48.71
VIT_17s0000g07910.t01	Wine grape	golgi, plasma membrane	43.54	47.69
VIT_01s0026g00520.t01	Wine grape	golgi, mitochondrion, plasma membrane, vacuole	31.18	47.03
PGSC0003DMT400010539	Potato	plasma membrane	45.22	46.53
Solyc05g005850.2.1	Tomato	plasma membrane	44.66	46.22
VIT_01s0026g00500.t01	Wine grape	extracellular, golgi, vacuole	19.38	45.7
VIT_14s0066g01650.t01	Wine grape	golgi, plasma membrane, vacuole	43.82	43.33
VIT_14s0066g01640.t01	Wine grape	plasma membrane	42.98	42.62
VIT_17s0000g07930.t01	Wine grape	plasma membrane	40.45	42.6
VIT_01s0026g00550.t01	Wine grape	golgi, plasma membrane	26.69	37.55

Protein Annotations

EntrezGene:100248371	wikigene:100248371	MapMan:24.2.1.5	EMBL:AM437572	ProteinID:CAN71719	ProteinID:CAN71719.1
ProteinID:CBI32107	ProteinID:CBI32107.3	UniProt:D7TNN4	InterPro:EamA_dom	EMBL:FN596002	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EntrezGene:LOC100248371	wikigene:LOC100248371
PFAM:PF00892	PANTHER:PTHR31218	PANTHER:PTHR31218:SF36	SUPFAM:SSF103481	TIGR:TC57536	TMHMM:TMhelix
UniParc:UPI00015CAD55	ArrayExpress:VIT_01s0026g00540	EnsemblPlantsGene:VIT_01s0026g00540	EnsemblPlants:VIT_01s0026g00540.t01	unigene:Vvi.16850	InterPro:WAT1-related
RefSeq:XP_002266928	RefSeq:XP_002266928.2	RefSeq:XP_010653186.1	RefSeq:XP_010653192.1	SEG:seg	:

Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:D7TNN4]

Coordinates

chr1:+:9302410..9307019

Molecular Weight (calculated)

38604.0 Da

IEP (calculated)

9.382

GRAVY (calculated)

0.689

Length

356 amino acids

Sequence
(BLAST)

001: MGMKGAAAYA GMVMAEFAQV GLMIASKAAI SSGMPNLVFI LYSNTLASLI LLPSCLLFHR SPRPQLTFSL LSGFFLLALL GFFAQIFGYA GIQYSSATLG
101: TAMLNLVPGF TFILAIIFRM ERLDWRGSSM AKSMGTVVSI AGAFIVTFYK GSPILMTPSP SNFPDQLFLS QQSNWVFGGL LLAADCVMSS AWLILQASIL
201: KKYPAELIIN FYYCFFVAIQ SAAASLIMER GPGAWSLKPS TRFIAVMYSG VFGYVFQVGA ITWCVHQKGP VFVAMFKPVG IVVAVAMGVI FLGDTFYMGS
301: LIGATVIVIG FYSVMWGKAK EEKIDEDIGM RSLESTSQKA PLLQNYIEGP SLPKQN

Best Arabidopsis Sequence Match ( AT3G28050.1 )
(BLAST)

001: MARKYFQREV LPVTALVIME CANVGLNTLF KAATLKGMSF HVFIVYSYGL AALLLLPSLF CSFRSRTLPP MNFSILYKIV LLGIIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA VVFRMESVSF KRTSSVAKML GTVVSIGGAF IVTLYNGPVV IAKSPPSVSL RSQSTNPNWI LGAGFLAVEY FCVPLWYIVQ
201: TQIMREYPAE FTVVCFYSIG VSFWTALVTL FTEGNDLGAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEVALV EDDNKANHEE ANEADLDSPS GSQKAPLLES YKNDEHV

Arabidopsis Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VL75]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.