Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 8
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g005850.2.1 | Tomato | plasma membrane | 92.77 | 93.31 |
| PGSC0003DMT400010543 | Potato | plasma membrane, plastid | 48.84 | 48.42 |
| VIT_01s0026g00540.t01 | Wine grape | golgi, plasma membrane | 46.53 | 45.22 |
| KRH53403 | Soybean | plasma membrane | 45.38 | 44.86 |
| PGSC0003DMT400010538 | Potato | plasma membrane | 40.75 | 40.87 |
| PGSC0003DMT400010535 | Potato | plasma membrane | 31.21 | 34.39 |
| PGSC0003DMT400061666 | Potato | plasma membrane | 30.35 | 28.61 |
| PGSC0003DMT400097482 | Potato | extracellular, plasma membrane, plastid | 14.45 | 25.91 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400010539 | EnsemblPlantsGene:PGSC0003DMG401004120 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | InterPro:EamA_dom |
| InterPro:WAT1-related | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF36 | PFAM:PF00892 | PGSC:PGSC0003DMG401004120 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000296419D | UniProt:M0ZY77 | MapMan:24.2.1.5 | : | : |
Description
Auxin-induced protein 5NG4 [Source:PGSC_GENE;Acc:PGSC0003DMG401004120]
Coordinates
chr5:-:7568028..7571415
Molecular Weight (calculated)
38010.0 Da
IEP (calculated)
9.606
GRAVY (calculated)
0.884
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMSGVVPFI AMIVQQLAQV GLAVVAKVAM STGMTSFTYT FYSSAFSTLL LIPLSFFLHR SAIPPLWPTF LYGFFLLGIM GFLMQVLGFL GLQYSSPLLS
101: TAILQLVPGF TFILAVILRM ETFEYKSLST MAKTIGTLVS IIGAFVATLY KGPQVFGISP LNTILTTPSA WAIGGLLTMI CSLIASFFII SQAFVLKKYP
201: AELILMLFYS CCVTILCAVF SLIVERDLNS WSLSPHSRLM AIIYSGLFGN VFQVSIGAWC VRKKGPLFVV MFHPLGIVVA MAASIFMGEI IHVGSLVGSI
301: IIVIGFYSVI WGQSKEWKKK EKNLGSNNKK MPFLQDKIDD DPEVNI
101: TAILQLVPGF TFILAVILRM ETFEYKSLST MAKTIGTLVS IIGAFVATLY KGPQVFGISP LNTILTTPSA WAIGGLLTMI CSLIASFFII SQAFVLKKYP
201: AELILMLFYS CCVTILCAVF SLIVERDLNS WSLSPHSRLM AIIYSGLFGN VFQVSIGAWC VRKKGPLFVV MFHPLGIVVA MAASIFMGEI IHVGSLVGSI
301: IIVIGFYSVI WGQSKEWKKK EKNLGSNNKK MPFLQDKIDD DPEVNI
001: MREAGEEKVA WKYFTRDVVP FAAMFAVECA TVGSNTLFKA ATLRGLSFYV FVFYSYIVST LLLLPLSVIF GRSRRLPAAK SPLFFKIFLL GLVGFMSQIA
101: GCKGIAYSSP TLASAISNLT PAFTFTLAVI FRMEQVRLRS SATQAKIIGA ILSISGALVV VLYKGPQVLA SASFTTVLPT VTLHQQLTSI ESSWIIGGLL
201: LASQYFLISV WYILQTRVME VYPEEITVVF FYNLFATLIS VPVCLFAESN LTSWVLKPDI SLAAIIYSGV FVSLFSALTH TWGLHLKGPV YISLFRPLSI
301: AIAVAMGAIF LGDALHLGSV IGSMILCIGF YTVIWGKARE DTIKTVAGSE QSPLLLTHII EDGAFPLS
101: GCKGIAYSSP TLASAISNLT PAFTFTLAVI FRMEQVRLRS SATQAKIIGA ILSISGALVV VLYKGPQVLA SASFTTVLPT VTLHQQLTSI ESSWIIGGLL
201: LASQYFLISV WYILQTRVME VYPEEITVVF FYNLFATLIS VPVCLFAESN LTSWVLKPDI SLAAIIYSGV FVSLFSALTH TWGLHLKGPV YISLFRPLSI
301: AIAVAMGAIF LGDALHLGSV IGSMILCIGF YTVIWGKARE DTIKTVAGSE QSPLLLTHII EDGAFPLS
Arabidopsis Description
WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:F4KHA9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.