Factsheet for PGSC0003DMT400061666

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 6
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400097482	Potato	extracellular, plasma membrane, plastid	49.59	94.3
Solyc04g025750.2.1	Tomato	plasma membrane	92.64	92.64
VIT_01s0026g00550.t01	Wine grape	golgi, plasma membrane	32.15	46.64
Bra003959.1-P	Field mustard	golgi, plasma membrane	45.23	44.5
CDY42998	Canola	golgi, plasma membrane	45.23	44.27
CDX68349	Canola	plasma membrane	44.96	44.24
CDY03759	Canola	plasma membrane	44.96	44.0
Bra007904.1-P	Field mustard	golgi, plasma membrane	44.96	44.0
CDY23506	Canola	plasma membrane	44.69	43.97
AT1G70260.1	Thale cress	plasma membrane	44.14	43.2
CDY38802	Canola	golgi, plasma membrane, vacuole	44.14	43.2
Bra016228.1-P	Field mustard	extracellular, plasma membrane, vacuole	41.96	42.78
KRH53400	Soybean	plasma membrane	41.69	42.5
CDY61698	Canola	plasma membrane	42.23	41.55
Bra027819.1-P	Field mustard	plasma membrane	42.23	41.55
AT1G60050.1	Thale cress	plasma membrane	41.96	41.18
KRH53402	Soybean	extracellular, plasma membrane	40.6	40.93
CDY65646	Canola	extracellular, plasma membrane	31.88	38.24
CDY11606	Canola	plasma membrane	44.14	34.47
PGSC0003DMT400010535	Potato	plasma membrane	28.61	33.44
PGSC0003DMT400010538	Potato	plasma membrane	30.79	32.75
PGSC0003DMT400010539	Potato	plasma membrane	28.61	30.35
PGSC0003DMT400010543	Potato	plasma membrane, plastid	28.07	29.51

Protein Annotations

EntrezGene:107063247	MapMan:24.2.1.5	InterPro:EamA_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
UniProt:M1C7U6	PFAM:PF00892	EnsemblPlantsGene:PGSC0003DMG400024000	PGSC:PGSC0003DMG400024000	EnsemblPlants:PGSC0003DMT400061666	PANTHER:PTHR31218
PANTHER:PTHR31218:SF61	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000295C211	InterPro:WAT1-related	RefSeq:XP_015170360.1
SEG:seg	:	:	:	:	:

Description

Nodulin MtN21 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024000]

Coordinates

chr4:-:23349363..23351185

Molecular Weight (calculated)

40859.9 Da

IEP (calculated)

8.678

GRAVY (calculated)

0.628

Length

367 amino acids

Sequence
(BLAST)

001: MAVKVAIGDM LPCTSMIIIE ACTIFLTIMA STVMSKLRMS SFVFVVYTNA LSFIFLIPFS ILFHRNNRTE EPLFTFPLVL RAFFLGLVGV TIAQNLAFAG
101: LSYSSPIVAC GAANMIPAFS YIIAIILRKI RSDWKRQESI VRVIGSLISI MGILGMTFYK GPVVKQYSPS FLHLATSSHL FIFTSTHENW VLGCFLFASA
201: SFALVIWNII QAGTSKKHPH VMKITCLYTL FGTIQSALLA LFMEKDLTVW RLKLDMELLV IVLTAIFGSL IRSNVQIWCS RLKGPSYILF FKPVGVPVAS
301: TCGCVLFAAT FHYGSMLSAC ICGLGYYTTL WGQLKEDETM KNKKGNVTTS DERVPLLEEQ EEEDSQV

Best Arabidopsis Sequence Match ( AT1G70260.1 )
(BLAST)

001: MEVKVRRDEL VPFVAMAIME ACTIALTIMA KTALTGGMSP FVFVVYTNAF GSILLLPFSF LFHRNERTEQ SIFSWPLLVR VFFLGFTGIF MFQNLAFVGL
101: RFSSPIVVCA MGLQIPSFSF LLSIILGRSK LDWRNTSTRA KLMGTIVSLS GAFVEELYKG PFIRPASSAS PNRFLKSVPK LLVYYNLPDN WFLGCIFLAV
201: AVFSVSLFNV VQTGTVKKYP HVMKVASFYS IVGTIQCLLF SLFMERDLSA WKIQPNFDLY LIIATGTFGS VIRTSVHVKC TQMKGPYYVP LFKPFGIFWA
301: TLFGTSFFVN SLHYGSVLGA AIAGVGYFTV SWGQLKESEE KQSSNEERKS IKTIHHRDED EYKVPLLINQ EESPV

Arabidopsis Description

WAT1-related protein At1g70260 [Source:UniProtKB/Swiss-Prot;Acc:F4I5D5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.