Factsheet for PGSC0003DMT400097482

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 2
plasma membrane 3
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061666	Potato	plasma membrane	94.3	49.59
VIT_01s0026g00550.t01	Wine grape	golgi, plasma membrane	46.63	35.57
CDY65646	Canola	extracellular, plasma membrane	37.31	23.53
KRH53400	Soybean	plasma membrane	40.41	21.67
Bra016228.1-P	Field mustard	extracellular, plasma membrane, vacuole	39.9	21.39
CDY42998	Canola	golgi, plasma membrane	40.93	21.07
Bra003959.1-P	Field mustard	golgi, plasma membrane	40.41	20.91
CDY23506	Canola	plasma membrane	40.41	20.91
AT1G70260.1	Thale cress	plasma membrane	40.41	20.8
CDX68349	Canola	plasma membrane	39.9	20.64
KRH53402	Soybean	extracellular, plasma membrane	38.86	20.6
Bra007904.1-P	Field mustard	golgi, plasma membrane	39.9	20.53
CDY03759	Canola	plasma membrane	39.9	20.53
CDY38802	Canola	golgi, plasma membrane, vacuole	39.38	20.27
AT1G60050.1	Thale cress	plasma membrane	38.34	19.79
CDY61698	Canola	plasma membrane	37.31	19.3
Bra027819.1-P	Field mustard	plasma membrane	37.31	19.3
PGSC0003DMT400010535	Potato	plasma membrane	31.09	19.11
PGSC0003DMT400010538	Potato	plasma membrane	30.05	16.81
Solyc04g025780.1.1	Tomato	extracellular	13.47	16.46
CDY11606	Canola	plasma membrane	39.9	16.38
PGSC0003DMT400010539	Potato	plasma membrane	25.91	14.45
PGSC0003DMT400010543	Potato	plasma membrane, plastid	22.8	12.61

Protein Annotations

EnsemblPlants:PGSC0003DMT400097482	EnsemblPlantsGene:PGSC0003DMG400047053	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:WAT1-related
PANTHER:PTHR31218	PANTHER:PTHR31218:SF61	PGSC:PGSC0003DMG400047053	TMHMM:TMhelix	UniParc:UPI0002953A45	UniProt:M1E0Q7
MapMan:24.2.1.5	:	:	:	:	:

Description

Nodulin MtN21 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400047053]

Coordinates

chr4:+:23422279..23423179

Molecular Weight (calculated)

21684.7 Da

IEP (calculated)

7.836

GRAVY (calculated)

0.353

Length

193 amino acids

Sequence
(BLAST)

001: MTFYKGPVVK QYSPSFLHLA TSPHLFIFIS THENWVLGCF LFASASFALV IWNIIQVGTS KKHPHVMKIT CLYTLFGTIQ SALLALLMEK DLRVWKLKLD
101: MELLVIVLTG PSYALFFKPV GVPFASTCGC VLFAATFHYG SMLSACICGL GYYTTLWGQL KEDETMKNKK GNVITSDERV PLLQEQQEED SQV

Best Arabidopsis Sequence Match ( AT1G70260.1 )
(BLAST)

001: MEVKVRRDEL VPFVAMAIME ACTIALTIMA KTALTGGMSP FVFVVYTNAF GSILLLPFSF LFHRNERTEQ SIFSWPLLVR VFFLGFTGIF MFQNLAFVGL
101: RFSSPIVVCA MGLQIPSFSF LLSIILGRSK LDWRNTSTRA KLMGTIVSLS GAFVEELYKG PFIRPASSAS PNRFLKSVPK LLVYYNLPDN WFLGCIFLAV
201: AVFSVSLFNV VQTGTVKKYP HVMKVASFYS IVGTIQCLLF SLFMERDLSA WKIQPNFDLY LIIATGTFGS VIRTSVHVKC TQMKGPYYVP LFKPFGIFWA
301: TLFGTSFFVN SLHYGSVLGA AIAGVGYFTV SWGQLKESEE KQSSNEERKS IKTIHHRDED EYKVPLLINQ EESPV

Arabidopsis Description

WAT1-related protein At1g70260 [Source:UniProtKB/Swiss-Prot;Acc:F4I5D5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.