Factsheet for PGSC0003DMT400010543

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 3
mitochondrion 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005860.1.1	Tomato	plasma membrane	95.42	89.52
VIT_01s0026g00540.t01	Wine grape	golgi, plasma membrane	57.02	55.9
KRH53403	Soybean	plasma membrane	55.3	55.14
PGSC0003DMT400010539	Potato	plasma membrane	48.42	48.84
PGSC0003DMT400010538	Potato	plasma membrane	44.13	44.64
PGSC0003DMT400010535	Potato	plasma membrane	31.81	35.35
PGSC0003DMT400061666	Potato	plasma membrane	29.51	28.07
PGSC0003DMT400097482	Potato	extracellular, plasma membrane, plastid	12.61	22.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400010543	EnsemblPlantsGene:PGSC0003DMG402004120	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:EamA_dom
InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF36	PFAM:PF00892	PGSC:PGSC0003DMG402004120	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000295CFD5	UniProt:M0ZY81	MapMan:24.2.1.5	:

Description

Auxin-induced protein 5NG4 [Source:PGSC_GENE;Acc:PGSC0003DMG402004120]

Coordinates

chr5:-:7561921..7567322

Molecular Weight (calculated)

38575.2 Da

IEP (calculated)

9.237

GRAVY (calculated)

0.761

Length

349 amino acids

Sequence
(BLAST)

001: MAMEMKVALP YIGMASTQFA QVGLMIVGKK AMSAGMTNFT FVFYSNTLAA LILLPSLFFY RSTRPPLNFS LICWFFLLGV LGCSAQLTGY TGINYTSASF
101: ASAMLNLIPG FTFILAVIFR MEKLDCRSTS TLIKSIGTIV SIAGAFTATL YKGPQILLTS SSKPQNYLHF QETDWIIGGL YLVVDCVVSS LYLIVQASVL
201: QKYPVELIVV FFYCFFASII SAIVSLFMDR NLNAWLLQPG TRLFAVLYSG IFGSAFQVSV MFWCIRRKGP LFVAMFHPLG IVIAAALGII FLGDIFYLGS
301: LMGSIIIVVG FYAVMWGKTK EDKVDEDKLT RNINSKSPLL EIKDAETKI

Best Arabidopsis Sequence Match ( AT3G28050.1 )
(BLAST)

001: MARKYFQREV LPVTALVIME CANVGLNTLF KAATLKGMSF HVFIVYSYGL AALLLLPSLF CSFRSRTLPP MNFSILYKIV LLGIIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA VVFRMESVSF KRTSSVAKML GTVVSIGGAF IVTLYNGPVV IAKSPPSVSL RSQSTNPNWI LGAGFLAVEY FCVPLWYIVQ
201: TQIMREYPAE FTVVCFYSIG VSFWTALVTL FTEGNDLGAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEVALV EDDNKANHEE ANEADLDSPS GSQKAPLLES YKNDEHV

Arabidopsis Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VL75]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.